Variant report

Variant	rs1743812
Chromosome Location	chr10:38106282-38106283
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:38105639..38107240-chr10:38135599..38138285,2	K562	blood:

Extended variants
information (count: 341 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:336)

rs_ID	r²[population]
rs10508860	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1148272	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1148273	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1148274	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1148275	0.90[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1148276	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1148277	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1148278	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1148279	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1148280	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1148281	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1148282	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1148283	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1148284	0.90[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1148285	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1148286	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1148288	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1148289	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1148290	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1148291	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1148292	0.89[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.86[AMR][1000 genomes]
rs1148293	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1148294	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1148295	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1148296	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1148297	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11591935	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11592531	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11592992	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11593389	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11593422	0.87[EUR][1000 genomes]
rs11593648	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11593864	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11594192	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11594193	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11594576	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11594707	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11595211	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11595596	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11595912	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11595951	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11596009	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11596513	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11597265	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11597295	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11597342	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11597703	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11597806	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11599846	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1208549	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1208550	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208551	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208553	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208557	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208558	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1208561	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1208562	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208563	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208564	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208565	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208566	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208567	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208568	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208569	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208571	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208574	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208577	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208579	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208581	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208583	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208584	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208585	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208586	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208589	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1208590	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1208593	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208594	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208598	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208599	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1208600	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1208602	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208604	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208605	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208606	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208610	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208611	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1208612	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208613	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208614	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208615	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1208616	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1208617	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1208618	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1208620	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208622	0.90[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208623	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208624	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1208625	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208626	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208628	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208629	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208631	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208632	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208634	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208635	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208636	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208639	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208642	1.00[CEU][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208644	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208646	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1208647	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208648	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208649	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208650	0.90[CEU][hapmap];1.00[GIH][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208651	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208652	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208655	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208656	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208657	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1208659	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208660	1.00[CEU][hapmap];0.86[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208661	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208662	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208664	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208665	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1208666	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208667	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208668	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1208669	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208670	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208671	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208672	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208673	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208674	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208676	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1208677	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1208678	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1208679	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1208680	0.89[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1208682	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1208685	0.89[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1208686	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208687	1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208688	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208690	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208691	1.00[CEU][hapmap]
rs1208692	0.90[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208693	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208694	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208696	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1208698	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208699	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208701	0.90[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208702	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208703	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208704	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208705	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208706	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1208707	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1208709	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1208710	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1208711	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1208712	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1208715	0.89[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1208717	1.00[CEU][hapmap];1.00[MKK][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208718	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208719	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208720	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208721	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208722	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208723	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208724	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208725	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208726	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208727	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208728	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208729	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208730	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208731	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1208763	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1208764	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1208765	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1208766	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1208768	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1208771	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1208772	0.89[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1208773	0.89[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1208774	0.89[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1208776	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1208777	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1208778	0.89[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1209424	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1209748	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1210991	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1211000	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1211422	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1211708	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1211709	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1212107	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12262446	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1322315	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1322320	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1322321	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1361894	0.89[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1419246	0.89[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1592338	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1618829	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1620874	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1620971	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1621236	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1623969	0.87[EUR][1000 genomes]
rs1629948	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1735587	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1735591	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1735601	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1735610	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1735622	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1735623	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1735624	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1735626	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1735627	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1735628	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1735631	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1735634	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1735635	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1735636	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1735637	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1742229	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1742230	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1742231	0.89[CEU][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1742232	0.89[CEU][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1742233	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1742234	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1742236	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1742237	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1742238	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1742240	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1742242	0.89[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1743811	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1743813	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1743814	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17576639	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17576786	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17577243	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17577299	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17586860	0.90[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17591312	0.84[EUR][1000 genomes]
rs17591524	0.90[AMR][1000 genomes]
rs17607259	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17607266	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17607344	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17660470	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17660553	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17660785	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17660828	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17660840	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1779009	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1779018	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1779019	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1779020	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1779021	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1779022	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1779025	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1779028	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1779029	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1779030	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1779031	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1779036	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1779046	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1779047	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1779048	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1779049	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1779050	0.89[CEU][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1779051	0.89[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1779052	0.89[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1779053	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1779061	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1779064	0.89[CEU][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1779065	0.89[CEU][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1779066	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1779072	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1779074	0.97[EUR][1000 genomes]
rs1779076	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1779078	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1779089	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1779132	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1779144	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1779151	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1779155	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1830613	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1985654	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1985655	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2211537	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2472156	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2472157	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2474544	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2474546	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2474547	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2504117	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2505201	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2753875	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3117562	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3117563	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3121601	0.83[AMR][1000 genomes]
rs4934592	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4934595	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4934596	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4934893	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4934895	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4934904	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4934905	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4934908	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4934909	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4934910	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4934911	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4934913	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4934928	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58001845	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61735514	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7071116	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7076726	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7077782	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7089949	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7098578	0.88[CEU][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73241926	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7393766	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs743100	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs767263	0.89[CEU][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs767264	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7916515	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs874860	0.89[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9299750	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9418281	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9418282	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9418284	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9418285	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv982874	chr10:38092839-38111415	ZNF genes & repeats Weak transcription Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1743812	ZNF25	cis	parietal	SCAN
rs1743812	ZNF248	Cis_1M	lymphoblastoid	RTeQTL
rs1743812	ZNF248	cis	lymphoblastoid	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38103000-38109200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr10:38103800-38118000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr10:38104400-38107400	Weak transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links