Variant report

Variant	rs3121601
Chromosome Location	chr10:38055483-38055484
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 180 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:174)

rs_ID	r²[population]
rs10508860	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1148272	0.90[AMR][1000 genomes]
rs1148273	0.90[AMR][1000 genomes]
rs1148274	0.83[AMR][1000 genomes]
rs1148275	0.83[AMR][1000 genomes]
rs1148276	0.83[AMR][1000 genomes]
rs1148277	0.83[AMR][1000 genomes]
rs1148278	0.83[AMR][1000 genomes]
rs1148279	0.83[AMR][1000 genomes]
rs1148280	0.80[AMR][1000 genomes]
rs1148281	0.80[AMR][1000 genomes]
rs1148282	0.83[AMR][1000 genomes]
rs1148283	0.83[AMR][1000 genomes]
rs11591935	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11592531	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11592992	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11593389	0.90[AMR][1000 genomes]
rs11595596	0.90[AMR][1000 genomes]
rs11596009	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11596513	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11597295	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11597342	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11599846	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1208639	0.83[AMR][1000 genomes]
rs1208642	0.83[AMR][1000 genomes]
rs1208644	0.83[AMR][1000 genomes]
rs1208646	0.83[AMR][1000 genomes]
rs1208647	0.83[AMR][1000 genomes]
rs1208648	0.83[AMR][1000 genomes]
rs1208649	0.83[AMR][1000 genomes]
rs1208650	0.83[AMR][1000 genomes]
rs1208676	0.90[AMR][1000 genomes]
rs1208677	0.90[AMR][1000 genomes]
rs1208678	0.90[AMR][1000 genomes]
rs1208679	0.90[AMR][1000 genomes]
rs1208680	0.90[AMR][1000 genomes]
rs1208682	0.90[AMR][1000 genomes]
rs1208685	0.90[AMR][1000 genomes]
rs1208686	0.90[AMR][1000 genomes]
rs1208687	0.90[AMR][1000 genomes]
rs1208688	0.90[AMR][1000 genomes]
rs1208690	0.90[AMR][1000 genomes]
rs1208692	0.87[AMR][1000 genomes]
rs1208693	0.90[AMR][1000 genomes]
rs1208694	0.90[AMR][1000 genomes]
rs1208696	0.90[AMR][1000 genomes]
rs1208698	0.87[AMR][1000 genomes]
rs1208699	0.83[AMR][1000 genomes]
rs1208701	0.83[AMR][1000 genomes]
rs1208702	0.83[AMR][1000 genomes]
rs1208703	0.83[AMR][1000 genomes]
rs1208704	0.83[AMR][1000 genomes]
rs1208705	0.83[AMR][1000 genomes]
rs1208706	0.90[AMR][1000 genomes]
rs1208707	0.90[AMR][1000 genomes]
rs1208709	0.90[AMR][1000 genomes]
rs1208710	0.90[AMR][1000 genomes]
rs1208711	0.90[AMR][1000 genomes]
rs1208712	0.90[AMR][1000 genomes]
rs1208715	0.90[AMR][1000 genomes]
rs1208717	0.83[AMR][1000 genomes]
rs1208718	0.83[AMR][1000 genomes]
rs1208719	0.83[AMR][1000 genomes]
rs1208720	0.83[AMR][1000 genomes]
rs1208721	0.83[AMR][1000 genomes]
rs1208722	0.83[AMR][1000 genomes]
rs1208723	0.83[AMR][1000 genomes]
rs1208724	0.83[AMR][1000 genomes]
rs1208725	0.83[AMR][1000 genomes]
rs1208726	0.83[AMR][1000 genomes]
rs1208727	0.83[AMR][1000 genomes]
rs1208728	0.83[AMR][1000 genomes]
rs1208729	0.83[AMR][1000 genomes]
rs1208730	0.83[AMR][1000 genomes]
rs1208731	0.83[AMR][1000 genomes]
rs1208763	0.87[AMR][1000 genomes]
rs1208764	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1208765	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1208766	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1208768	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1208771	0.90[AMR][1000 genomes]
rs1208772	0.90[AMR][1000 genomes]
rs1208773	0.90[AMR][1000 genomes]
rs1208774	0.90[AMR][1000 genomes]
rs1208776	0.90[AMR][1000 genomes]
rs1208777	0.90[AMR][1000 genomes]
rs1208778	0.90[AMR][1000 genomes]
rs1209424	0.90[AMR][1000 genomes]
rs1211708	0.83[AMR][1000 genomes]
rs1211709	0.90[AMR][1000 genomes]
rs12262446	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1322315	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1322320	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1322321	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1361894	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1419246	0.90[AMR][1000 genomes]
rs1620874	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1620971	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1735601	0.83[AMR][1000 genomes]
rs1742229	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1742230	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1742231	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1742232	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1742233	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1742234	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1742236	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1742237	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1742238	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1742240	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1742242	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1743811	0.83[AMR][1000 genomes]
rs1743812	0.83[AMR][1000 genomes]
rs1743813	0.83[AMR][1000 genomes]
rs1743814	0.86[AMR][1000 genomes]
rs17576639	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17576786	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17577243	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17577299	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17591312	0.82[AMR][1000 genomes]
rs17591524	0.93[AMR][1000 genomes]
rs17607259	0.90[AMR][1000 genomes]
rs17607266	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17607344	0.87[AMR][1000 genomes]
rs17660470	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17660553	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17660785	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17660828	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17660840	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1779009	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1779025	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1779030	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1779046	0.86[AMR][1000 genomes]
rs1779047	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1779048	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1779049	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1779050	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1779051	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1779052	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1779053	0.90[AMR][1000 genomes]
rs1779064	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1779065	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1779089	0.83[AMR][1000 genomes]
rs1779132	0.83[AMR][1000 genomes]
rs1779144	0.86[AMR][1000 genomes]
rs1779151	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1830613	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1985654	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1985655	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2753875	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3117562	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3117563	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4934592	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4934595	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4934596	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4934893	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4934895	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4934904	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4934905	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4934908	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4934909	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4934910	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4934911	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4934913	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58001845	0.90[AMR][1000 genomes]
rs7071116	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs767263	0.90[AMR][1000 genomes]
rs767264	0.90[AMR][1000 genomes]
rs874860	0.90[AMR][1000 genomes]
rs9299750	0.93[AMR][1000 genomes]
rs9418279	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9418281	0.93[AMR][1000 genomes]
rs9418282	0.89[AMR][1000 genomes]
rs9418284	0.80[EUR][1000 genomes]
rs9418285	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv975812	chr10:37990724-38084639	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv947608	chr10:38053801-38066317	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3121601	ZNF248	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38043600-38060800	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr10:38047000-38069400	Weak transcription	Ovary	ovary
3	chr10:38049000-38056400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr10:38049000-38064800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr10:38051800-38066000	Weak transcription	HepG2	liver

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