Variant report

Variant	rs1208691
Chromosome Location	chr10:38097810-38097811
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1148274	1.00[CEU][hapmap]
rs1148275	0.90[CEU][hapmap]
rs1148276	1.00[CEU][hapmap]
rs1148277	1.00[CEU][hapmap]
rs1148278	1.00[CEU][hapmap]
rs1148283	1.00[CEU][hapmap]
rs1148284	1.00[CEU][hapmap]
rs1148288	1.00[CEU][hapmap]
rs1148292	0.88[CEU][hapmap]
rs1148293	1.00[CEU][hapmap]
rs11595211	1.00[CEU][hapmap]
rs11597265	1.00[CEU][hapmap]
rs1208586	1.00[CEU][hapmap]
rs1208602	1.00[CEU][hapmap]
rs1208604	1.00[CEU][hapmap]
rs1208605	1.00[CEU][hapmap]
rs1208606	1.00[CEU][hapmap]
rs1208611	1.00[CEU][hapmap]
rs1208622	1.00[CEU][hapmap]
rs1208629	1.00[CEU][hapmap]
rs1208632	1.00[CEU][hapmap]
rs1208634	1.00[CEU][hapmap]
rs1208635	1.00[CEU][hapmap]
rs1208639	1.00[CEU][hapmap]
rs1208642	1.00[CEU][hapmap]
rs1208644	1.00[CEU][hapmap]
rs1208647	1.00[CEU][hapmap]
rs1208649	1.00[CEU][hapmap]
rs1208650	0.89[CEU][hapmap]
rs1208659	1.00[CEU][hapmap]
rs1208660	1.00[CEU][hapmap]
rs1208661	1.00[CEU][hapmap]
rs1208662	1.00[CEU][hapmap]
rs1208664	1.00[CEU][hapmap]
rs1208666	1.00[CEU][hapmap]
rs1208673	1.00[CEU][hapmap]
rs1208680	0.89[CEU][hapmap]
rs1208685	0.88[CEU][hapmap]
rs1208687	1.00[CEU][hapmap]
rs1208692	0.90[CEU][hapmap]
rs1208694	1.00[CEU][hapmap]
rs1208698	1.00[CEU][hapmap]
rs1208701	0.90[CEU][hapmap]
rs1208705	1.00[CEU][hapmap]
rs1208715	0.89[CEU][hapmap]
rs1208717	1.00[CEU][hapmap]
rs1208718	1.00[CEU][hapmap]
rs1208722	1.00[CEU][hapmap]
rs1208723	1.00[CEU][hapmap]
rs1208724	1.00[CEU][hapmap]
rs1208727	1.00[CEU][hapmap]
rs1208728	1.00[CEU][hapmap]
rs1208730	1.00[CEU][hapmap]
rs1208772	0.88[CEU][hapmap]
rs1208773	0.88[CEU][hapmap]
rs1208774	0.88[CEU][hapmap]
rs1208778	0.89[CEU][hapmap]
rs1211708	1.00[CEU][hapmap]
rs1361894	0.88[CEU][hapmap]
rs1419246	0.88[CEU][hapmap]
rs1742231	0.89[CEU][hapmap]
rs1742232	0.89[CEU][hapmap]
rs1742242	0.89[CEU][hapmap]
rs1743811	1.00[CEU][hapmap]
rs1743812	1.00[CEU][hapmap]
rs1779028	1.00[CEU][hapmap]
rs1779050	0.89[CEU][hapmap]
rs1779051	0.88[CEU][hapmap]
rs1779052	0.88[CEU][hapmap]
rs1779061	1.00[CEU][hapmap]
rs1779064	0.89[CEU][hapmap]
rs1779065	0.89[CEU][hapmap]
rs1779089	1.00[CEU][hapmap]
rs7098578	0.89[CEU][hapmap]
rs767263	0.89[CEU][hapmap]
rs874860	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv982874	chr10:38092839-38111415	ZNF genes & repeats Weak transcription Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1208691	ZNF248	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38085400-38100800	Weak transcription	Left Ventricle	heart
2	chr10:38090400-38101000	Weak transcription	HepG2	liver
3	chr10:38090800-38102200	Weak transcription	Brain Angular Gyrus	brain
4	chr10:38091800-38102400	Weak transcription	Brain Anterior Caudate	brain
5	chr10:38092600-38105000	Weak transcription	Pancreas	Pancrea
6	chr10:38093000-38098800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:38093000-38102200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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