Variant report

Variant	rs12258703
Chromosome Location	chr10:38437505-38437506
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs11011445	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11011447	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11011448	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11011454	1.00[EUR][1000 genomes]
rs11011455	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11011456	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11011457	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11011492	1.00[ASN][1000 genomes]
rs12240841	1.00[ASN][1000 genomes]
rs12243715	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12244294	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12244439	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12244661	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12245632	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12245792	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12246341	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12246875	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12247832	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12248050	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12253640	1.00[EUR][1000 genomes]
rs12254726	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12258247	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12260759	1.00[ASN][1000 genomes]
rs12260877	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12261570	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12266231	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12266460	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12268280	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12268465	1.00[ASN][1000 genomes]
rs12772607	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12775500	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12782054	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12784488	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16905726	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16937696	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16937701	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28448364	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28607758	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28719516	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34067956	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34522767	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34571803	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34579247	1.00[EUR][1000 genomes]
rs34759610	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34908048	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36010363	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36043070	1.00[EUR][1000 genomes]
rs36091737	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36114117	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58217854	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7086341	1.00[ASN][1000 genomes]
rs7095460	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7100316	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71491235	1.00[EUR][1000 genomes]
rs71491237	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71491238	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71491239	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71491240	1.00[EUR][1000 genomes]
rs71491241	1.00[ASN][1000 genomes]
rs71491244	1.00[EUR][1000 genomes]
rs7895219	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7900878	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7901183	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv540566	chr10:38301001-38680127	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv550419	chr10:38311777-38501654	Enhancers Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv895031	chr10:38402789-38464886	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv895032	chr10:38427708-38498909	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv895033	chr10:38432348-38537070	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38428000-38439600	Weak transcription	HSMMtube	muscle
2	chr10:38435200-38438200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr10:38435600-38437800	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr10:38436600-38437600	Enhancers	Brain Angular Gyrus	brain
5	chr10:38436600-38437600	Enhancers	Brain Cingulate Gyrus	brain
6	chr10:38437000-38437600	Enhancers	Brain Hippocampus Middle	brain
7	chr10:38437200-38438400	Enhancers	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links