Variant report

Variant	rs34759610
Chromosome Location	chr10:38386102-38386103
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs11011445	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11011447	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11011448	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11011454	1.00[EUR][1000 genomes]
rs11011455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11011456	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11011457	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11011492	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11011493	0.85[AMR][1000 genomes]
rs12240841	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12243715	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12244294	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12244439	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12244661	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12245632	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12245792	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12246341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12246875	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12247832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12248050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12253640	1.00[EUR][1000 genomes]
rs12254726	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12258247	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12258703	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12258848	0.89[AFR][1000 genomes]
rs12260759	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12260877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12261570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12266231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12266460	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12268280	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12268465	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12772607	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12775500	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12782054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12784488	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16905726	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16937696	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16937701	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28448364	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28607758	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28719516	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34067956	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34522767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34571803	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34579247	1.00[EUR][1000 genomes]
rs34908048	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36010363	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36043070	1.00[EUR][1000 genomes]
rs36091737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36114117	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58217854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7086341	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7095460	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7100316	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71491235	1.00[EUR][1000 genomes]
rs71491237	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71491238	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71491239	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71491240	1.00[EUR][1000 genomes]
rs71491241	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs71491244	1.00[EUR][1000 genomes]
rs7895219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7900878	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7901183	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv1051121	chr10:38155991-38426204	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv540565	chr10:38155991-38426204	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv540566	chr10:38301001-38680127	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
8	nsv550419	chr10:38311777-38501654	Enhancers Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	nsv6465	chr10:38377662-38422125	Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38383800-38386200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
2	chr10:38384000-38388400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr10:38384200-38389000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr10:38384200-38389200	Weak transcription	Aorta	Aorta
5	chr10:38384400-38386800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr10:38384400-38388200	Weak transcription	Psoas Muscle	Psoas
7	chr10:38384400-38388800	Weak transcription	Fetal Intestine Small	intestine
8	chr10:38384400-38389200	Weak transcription	Small Intestine	intestine
9	chr10:38384400-38389400	Weak transcription	Thymus	Thymus
10	chr10:38384400-38396400	Weak transcription	HUVEC	blood vessel
11	chr10:38384600-38386200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr10:38384600-38386200	Strong transcription	HSMMtube	muscle
13	chr10:38384600-38386600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr10:38384600-38386800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr10:38384600-38386800	Strong transcription	Fetal Lung	lung
16	chr10:38384600-38387800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
17	chr10:38384600-38388000	Strong transcription	Placenta	Placenta
18	chr10:38384600-38388000	Weak transcription	NHLF	lung
19	chr10:38384600-38388200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr10:38384600-38388200	Strong transcription	Fetal Muscle Leg	muscle
21	chr10:38384600-38388600	Strong transcription	Fetal Muscle Trunk	muscle
22	chr10:38384600-38388600	ZNF genes & repeats	A549	lung
23	chr10:38384600-38388600	Strong transcription	NH-A	brain
24	chr10:38384600-38388800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr10:38384600-38389200	Weak transcription	Esophagus	oesophagus
26	chr10:38384600-38390600	Weak transcription	Fetal Heart	heart
27	chr10:38384600-38390800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr10:38384600-38390800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr10:38384600-38391200	Weak transcription	Colonic Mucosa	Colon
30	chr10:38384600-38391400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr10:38384600-38391400	Weak transcription	Brain Cingulate Gyrus	brain
32	chr10:38384600-38391400	Strong transcription	Skeletal Muscle Female	skeletal muscle
33	chr10:38384600-38391800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr10:38384600-38392800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr10:38384600-38392800	Weak transcription	Gastric	stomach
36	chr10:38384800-38386400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr10:38384800-38386400	Strong transcription	Fetal Brain Female	brain
38	chr10:38384800-38386600	Strong transcription	Fetal Stomach	stomach
39	chr10:38384800-38386800	Weak transcription	Brain Angular Gyrus	brain
40	chr10:38384800-38387000	Strong transcription	Fetal Intestine Large	intestine
41	chr10:38384800-38387200	Strong transcription	Skeletal Muscle Male	skeletal muscle
42	chr10:38384800-38387400	Strong transcription	HMEC	breast
43	chr10:38384800-38387600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr10:38384800-38387600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr10:38384800-38387800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr10:38384800-38387800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr10:38384800-38387800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr10:38384800-38387800	Strong transcription	Osteobl	bone
49	chr10:38384800-38388200	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr10:38384800-38388200	Strong transcription	Stomach Smooth Muscle	stomach

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