Variant report

Variant	rs2023432
Chromosome Location	chr10:38349437-38349438
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10827834	1.00[EUR][1000 genomes]
rs10827837	1.00[EUR][1000 genomes]
rs10827838	1.00[EUR][1000 genomes]
rs11011385	1.00[EUR][1000 genomes]
rs11011393	1.00[EUR][1000 genomes]
rs11011403	1.00[EUR][1000 genomes]
rs11011412	1.00[EUR][1000 genomes]
rs11011415	1.00[EUR][1000 genomes]
rs11011428	1.00[EUR][1000 genomes]
rs11011429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11011430	1.00[EUR][1000 genomes]
rs11011437	1.00[EUR][1000 genomes]
rs11011438	1.00[EUR][1000 genomes]
rs11812927	1.00[EUR][1000 genomes]
rs11813723	1.00[EUR][1000 genomes]
rs11813932	1.00[EUR][1000 genomes]
rs11814622	1.00[EUR][1000 genomes]
rs11816307	1.00[EUR][1000 genomes]
rs11816860	1.00[EUR][1000 genomes]
rs11818933	1.00[EUR][1000 genomes]
rs12241614	1.00[EUR][1000 genomes]
rs12242343	1.00[EUR][1000 genomes]
rs12245586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12248857	1.00[EUR][1000 genomes]
rs12250395	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12252754	1.00[EUR][1000 genomes]
rs12253640	1.00[AMR][1000 genomes]
rs12256794	1.00[EUR][1000 genomes]
rs12256916	1.00[EUR][1000 genomes]
rs12257902	1.00[EUR][1000 genomes]
rs12258128	1.00[EUR][1000 genomes]
rs12260189	1.00[EUR][1000 genomes]
rs12260310	1.00[EUR][1000 genomes]
rs12262814	1.00[EUR][1000 genomes]
rs12266728	1.00[EUR][1000 genomes]
rs12267847	1.00[EUR][1000 genomes]
rs12269398	1.00[EUR][1000 genomes]
rs12770231	1.00[EUR][1000 genomes]
rs12773340	1.00[EUR][1000 genomes]
rs12777107	1.00[EUR][1000 genomes]
rs12779056	1.00[EUR][1000 genomes]
rs34445730	1.00[EUR][1000 genomes]
rs34579247	1.00[AMR][1000 genomes]
rs34918037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35006520	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35246660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57753536	1.00[EUR][1000 genomes]
rs60538050	1.00[EUR][1000 genomes]
rs71491212	1.00[EUR][1000 genomes]
rs71491214	1.00[EUR][1000 genomes]
rs71491223	1.00[EUR][1000 genomes]
rs71491227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71491228	1.00[EUR][1000 genomes]
rs71491229	1.00[EUR][1000 genomes]
rs71491235	1.00[AMR][1000 genomes]
rs71491240	1.00[AMR][1000 genomes]
rs71491244	1.00[AMR][1000 genomes]
rs71494838	1.00[AMR][1000 genomes]
rs9651365	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv1051121	chr10:38155991-38426204	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv540565	chr10:38155991-38426204	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv534122	chr10:38240258-38356008	ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
8	nsv540566	chr10:38301001-38680127	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
9	nsv550419	chr10:38311777-38501654	Enhancers Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38334000-38350600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
2	chr10:38336200-38351600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:38340800-38351200	ZNF genes & repeats	Liver	Liver
4	chr10:38340800-38351600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
5	chr10:38340800-38353400	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
6	chr10:38341200-38351200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
7	chr10:38341200-38353800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:38341600-38351200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
9	chr10:38341600-38351400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
10	chr10:38341600-38351600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr10:38342000-38351200	Strong transcription	Skeletal Muscle Male	skeletal muscle
12	chr10:38342200-38350400	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
13	chr10:38345200-38350600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr10:38345400-38355200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr10:38345600-38350200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr10:38345600-38350400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr10:38345600-38353400	Strong transcription	Rectal Mucosa Donor 29	rectum
18	chr10:38345600-38354400	Weak transcription	Brain Cingulate Gyrus	brain
19	chr10:38345800-38353200	Strong transcription	Dnd41	blood
20	chr10:38346000-38351400	Strong transcription	Stomach Smooth Muscle	stomach
21	chr10:38346000-38353200	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr10:38346200-38350600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr10:38346200-38351200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr10:38346200-38358200	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr10:38346400-38349600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr10:38346400-38350000	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr10:38346400-38350600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr10:38346800-38349800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr10:38346800-38351000	Strong transcription	Rectal Mucosa Donor 31	rectum
30	chr10:38346800-38352400	Weak transcription	Hela-S3	cervix
31	chr10:38346800-38352600	Weak transcription	Fetal Thymus	thymus
32	chr10:38347000-38349600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr10:38347000-38349600	Weak transcription	Osteobl	bone
34	chr10:38347000-38349800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr10:38347000-38350000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr10:38347000-38350000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr10:38347000-38350000	Weak transcription	Fetal Muscle Trunk	muscle
38	chr10:38347000-38350000	Weak transcription	Small Intestine	intestine
39	chr10:38347000-38351200	Weak transcription	Stomach Mucosa	stomach
40	chr10:38347000-38351600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr10:38347000-38351600	Strong transcription	Monocytes-CD14+_RO01746	blood
42	chr10:38347000-38358200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr10:38347200-38352000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr10:38347400-38350200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr10:38347400-38350200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr10:38347600-38349600	Weak transcription	HMEC	breast
47	chr10:38347800-38350000	Strong transcription	Primary B cells from peripheral blood	blood
48	chr10:38347800-38351600	Strong transcription	Primary neutrophils fromperipheralblood	blood
49	chr10:38347800-38351600	Strong transcription	Primary T cells fromperipheralblood	blood
50	chr10:38347800-38351800	Weak transcription	HSMMtube	muscle

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