Variant report

Variant	rs35246660
Chromosome Location	chr10:38281145-38281146
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:29)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:29 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr10:38281120-38281270	SAEC	small airway:	n/a	n/a
2	SMC3	chr10:38281144-38281325	K562	blood:	n/a	n/a
3	RAD21	chr10:38281087-38281420	HepG2	liver:	n/a	n/a
4	CTCF	chr10:38281140-38281290	GM12870	blood:	n/a	n/a
5	RAD21	chr10:38281120-38281341	GM12878	blood:	n/a	n/a
6	CTCF	chr10:38281094-38281438	GM12878	blood:	n/a	n/a
7	YY1	chr10:38281127-38281427	GM12878	blood:	n/a	n/a
8	CTCF	chr10:38281140-38281290	AG09319	gingival:	n/a	n/a
9	CTCF	chr10:38281140-38281290	A549	lung:	n/a	n/a
10	CTCF	chr10:38281140-38281290	HPAF	blood vessel:	n/a	n/a
11	CTCF	chr10:38281140-38281290	BE2_C	brain:	n/a	n/a
12	CTCF	chr10:38281080-38281230	GM12872	blood:	n/a	n/a
13	RUNX3	chr10:38280962-38281357	GM12878	blood:	n/a	n/a
14	CTCF	chr10:38281120-38281270	HCPEpiC	choroid plexus:	n/a	n/a
15	RAD21	chr10:38280952-38281458	MCF-7	breast:	n/a	n/a
16	RAD21	chr10:38281069-38281463	HepG2	liver:	n/a	n/a
17	CTCF	chr10:38281086-38281451	K562	blood:	n/a	n/a
18	CTCF	chr10:38281140-38281290	HMEC	breast:	n/a	n/a
19	RUNX3	chr10:38280936-38281391	GM12878	blood:	n/a	n/a
20	CTCF	chr10:38281140-38281290	HMF	breast:	n/a	n/a
21	RAD21	chr10:38281083-38281392	GM12878	blood:	n/a	n/a
22	CTCF	chr10:38281140-38281290	HCT-116	colon:	n/a	n/a
23	RAD21	chr10:38281113-38281351	SK-N-SH_RA	brain:	n/a	n/a
24	CTCF	chr10:38281080-38281230	BE2_C	brain:	n/a	n/a
25	CTCF	chr10:38281120-38281270	K562	blood:	n/a	n/a
26	CTCF	chr10:38281140-38281290	GM12874	blood:	n/a	n/a
27	CTCF	chr10:38281080-38281230	HMEC	breast:	n/a	n/a
28	CTCF	chr10:38281140-38281290	AG09309	skin:	n/a	n/a
29	CTCF	chr10:38281140-38281290	HCFaa	heart:	n/a	n/a

No data

Variant related genes	Relation type
ENSG00000206840	TF binding region

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10827830	1.00[EUR][1000 genomes]
rs10827834	1.00[EUR][1000 genomes]
rs10827837	1.00[EUR][1000 genomes]
rs10827838	1.00[EUR][1000 genomes]
rs11011364	1.00[EUR][1000 genomes]
rs11011368	0.89[EUR][1000 genomes]
rs11011375	1.00[EUR][1000 genomes]
rs11011376	1.00[EUR][1000 genomes]
rs11011385	1.00[EUR][1000 genomes]
rs11011393	1.00[EUR][1000 genomes]
rs11011403	1.00[EUR][1000 genomes]
rs11011412	1.00[EUR][1000 genomes]
rs11011415	1.00[EUR][1000 genomes]
rs11011428	1.00[EUR][1000 genomes]
rs11011429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11011430	1.00[EUR][1000 genomes]
rs11011437	1.00[EUR][1000 genomes]
rs11011438	1.00[EUR][1000 genomes]
rs11812927	1.00[EUR][1000 genomes]
rs11813723	1.00[EUR][1000 genomes]
rs11813932	1.00[EUR][1000 genomes]
rs11814622	1.00[EUR][1000 genomes]
rs11816307	1.00[EUR][1000 genomes]
rs11816860	1.00[EUR][1000 genomes]
rs11818933	1.00[EUR][1000 genomes]
rs12240311	1.00[EUR][1000 genomes]
rs12241614	1.00[EUR][1000 genomes]
rs12242343	1.00[EUR][1000 genomes]
rs12245586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12248857	1.00[EUR][1000 genomes]
rs12250395	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12252754	1.00[EUR][1000 genomes]
rs12253640	1.00[AMR][1000 genomes]
rs12256181	1.00[EUR][1000 genomes]
rs12256794	1.00[EUR][1000 genomes]
rs12256916	1.00[EUR][1000 genomes]
rs12257902	1.00[EUR][1000 genomes]
rs12258024	1.00[EUR][1000 genomes]
rs12258128	1.00[EUR][1000 genomes]
rs12258252	1.00[EUR][1000 genomes]
rs12260189	1.00[EUR][1000 genomes]
rs12260310	1.00[EUR][1000 genomes]
rs12262814	1.00[EUR][1000 genomes]
rs12262927	1.00[EUR][1000 genomes]
rs12266728	1.00[EUR][1000 genomes]
rs12267847	1.00[EUR][1000 genomes]
rs12269398	1.00[EUR][1000 genomes]
rs12770231	1.00[EUR][1000 genomes]
rs12773340	1.00[EUR][1000 genomes]
rs12777107	1.00[EUR][1000 genomes]
rs12779056	1.00[EUR][1000 genomes]
rs2023432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34222428	1.00[EUR][1000 genomes]
rs34445730	1.00[EUR][1000 genomes]
rs34579247	1.00[AMR][1000 genomes]
rs34591573	1.00[EUR][1000 genomes]
rs34918037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34964888	1.00[EUR][1000 genomes]
rs35006520	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35404142	1.00[EUR][1000 genomes]
rs57753536	1.00[EUR][1000 genomes]
rs60538050	1.00[EUR][1000 genomes]
rs71491203	1.00[EUR][1000 genomes]
rs71491210	1.00[EUR][1000 genomes]
rs71491212	1.00[EUR][1000 genomes]
rs71491214	1.00[EUR][1000 genomes]
rs71491223	1.00[EUR][1000 genomes]
rs71491227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71491228	1.00[EUR][1000 genomes]
rs71491229	1.00[EUR][1000 genomes]
rs71491235	1.00[AMR][1000 genomes]
rs71491240	1.00[AMR][1000 genomes]
rs71491244	1.00[AMR][1000 genomes]
rs9651365	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv1051121	chr10:38155991-38426204	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv540565	chr10:38155991-38426204	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv534122	chr10:38240258-38356008	ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38280600-38281400	Enhancers	Dnd41	blood

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