Variant report

Variant	rs12258207
Chromosome Location	chr10:97543554-97543555
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11188471	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3897983	1.00[ASN][1000 genomes]
rs7903235	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv895905	chr10:97513362-97686064	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv895906	chr10:97513362-97703650	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv895907	chr10:97529318-97686064	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv1052213	chr10:97536795-97561941	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97529000-97544200	Weak transcription	Spleen	Spleen
2	chr10:97536600-97543600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:97540400-97545800	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr10:97541400-97544200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr10:97541400-97544400	Enhancers	Primary hematopoietic stem cells	blood
6	chr10:97541400-97544600	Enhancers	Rectal Smooth Muscle	rectum
7	chr10:97541400-97547800	Enhancers	Primary B cells from cord blood	blood
8	chr10:97541400-97548400	Enhancers	Primary B cells from peripheral blood	blood
9	chr10:97541600-97543600	Flanking Active TSS	GM12878-XiMat	blood
10	chr10:97541800-97545000	Enhancers	Colon Smooth Muscle	Colon
11	chr10:97542200-97545400	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr10:97542600-97544200	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr10:97542600-97545200	Enhancers	Duodenum Mucosa	Duodenum
14	chr10:97542800-97543800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr10:97543000-97545200	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr10:97543000-97552200	Weak transcription	Fetal Stomach	stomach
17	chr10:97543200-97543800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr10:97543200-97544200	Weak transcription	Brain Anterior Caudate	brain
19	chr10:97543200-97544200	Weak transcription	Brain Hippocampus Middle	brain
20	chr10:97543200-97545200	Weak transcription	Aorta	Aorta
21	chr10:97543200-97545600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:97543200-97552200	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr10:97543400-97543600	Enhancers	Duodenum Smooth Muscle	Duodenum

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