Variant report

Variant	rs12258269
Chromosome Location	chr10:93906791-93906792
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10509643	0.80[YRI][hapmap]
rs12252682	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs12267769	0.84[LWK][hapmap];0.80[YRI][hapmap]
rs7912078	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051226	chr10:93711296-93915586	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv540745	chr10:93711296-93915586	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93885400-93908400	Weak transcription	Lung	lung
2	chr10:93886200-93907800	Weak transcription	Psoas Muscle	Psoas
3	chr10:93886200-93910800	Weak transcription	Pancreas	Pancrea
4	chr10:93886200-93911600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr10:93892600-93911000	Weak transcription	Fetal Heart	heart
6	chr10:93895000-93909000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr10:93895400-93906800	Weak transcription	Brain Germinal Matrix	brain
8	chr10:93898200-93926200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr10:93902600-93907400	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr10:93902600-93908200	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr10:93902800-93910800	Weak transcription	Ovary	ovary
12	chr10:93902800-93911000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr10:93903000-93911000	Weak transcription	Colon Smooth Muscle	Colon
14	chr10:93903000-93925600	Weak transcription	Primary hematopoietic stem cells	blood
15	chr10:93903800-93907200	Weak transcription	GM12878-XiMat	blood
16	chr10:93904800-93907400	Enhancers	Primary B cells from cord blood	blood
17	chr10:93905400-93906800	Enhancers	Adipose Nuclei	Adipose
18	chr10:93905400-93906800	Enhancers	HUVEC	blood vessel
19	chr10:93905400-93916800	Weak transcription	Right Atrium	heart
20	chr10:93905600-93906800	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr10:93906000-93906800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr10:93906200-93906800	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr10:93906200-93907200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
24	chr10:93906200-93925600	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr10:93906400-93906800	Enhancers	Aorta	Aorta
26	chr10:93906400-93906800	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr10:93906400-93906800	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr10:93906400-93908000	Enhancers	Brain Angular Gyrus	brain
29	chr10:93906400-93908200	Enhancers	Primary B cells from peripheral blood	blood
30	chr10:93906400-93908200	Enhancers	Brain Substantia Nigra	brain
31	chr10:93906400-93908400	Enhancers	Pancreatic Islets	Pancreatic Islet
32	chr10:93906400-93908600	Enhancers	Brain Anterior Caudate	brain
33	chr10:93906600-93906800	Enhancers	Liver	Liver
34	chr10:93906600-93906800	Genic enhancers	Gastric	stomach
35	chr10:93906600-93907200	Enhancers	Left Ventricle	heart
36	chr10:93906600-93907200	Enhancers	Right Ventricle	heart
37	chr10:93906600-93907400	Enhancers	Brain Cingulate Gyrus	brain
38	chr10:93906600-93907400	Enhancers	Spleen	Spleen
39	chr10:93906600-93908400	Enhancers	Brain Hippocampus Middle	brain

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