Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93901969..93904436-chr10:93913045..93915789,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10882029	0.86[YRI][hapmap]
rs10882039	0.86[YRI][hapmap]
rs10882041	0.91[JPT][hapmap]
rs10882048	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs12221454	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12258269	0.80[YRI][hapmap]
rs12262492	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12267769	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2182647	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs730075	0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93898200-93926200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr10:93903000-93925600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr10:93905400-93916800	Weak transcription	Right Atrium	heart
4	chr10:93906200-93925600	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr10:93906800-93925600	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr10:93906800-93926600	Weak transcription	Aorta	Aorta
7	chr10:93908000-93915800	Weak transcription	Right Ventricle	heart
8	chr10:93908200-93915800	Weak transcription	Fetal Lung	lung
9	chr10:93908600-93926400	Weak transcription	Brain Anterior Caudate	brain
10	chr10:93911600-93917200	Weak transcription	Brain Substantia Nigra	brain
11	chr10:93911800-93926200	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr10:93911800-93926600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr10:93911800-93926600	Weak transcription	Left Ventricle	heart
14	chr10:93911800-93953200	Weak transcription	Pancreas	Pancrea
15	chr10:93912000-93915800	Weak transcription	Brain Hippocampus Middle	brain
16	chr10:93912000-93915800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr10:93912000-93915800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr10:93912000-93915800	Weak transcription	Ovary	ovary
19	chr10:93912000-93916000	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr10:93913600-93915800	Weak transcription	Psoas Muscle	Psoas
21	chr10:93915200-93917200	Enhancers	Brain Angular Gyrus	brain

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