Variant report

Variant	rs12262492
Chromosome Location	chr10:93922607-93922608
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93921448..93923441-chr10:94049941..94052060,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000107864	Chromatin interaction
ENSG00000198060	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10509643	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12221454	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12267769	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2182647	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93898200-93926200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr10:93903000-93925600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr10:93906200-93925600	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr10:93906800-93925600	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr10:93906800-93926600	Weak transcription	Aorta	Aorta
6	chr10:93908600-93926400	Weak transcription	Brain Anterior Caudate	brain
7	chr10:93911800-93926200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr10:93911800-93926600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr10:93911800-93926600	Weak transcription	Left Ventricle	heart
10	chr10:93911800-93953200	Weak transcription	Pancreas	Pancrea
11	chr10:93916400-93926400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr10:93917200-93926200	Weak transcription	Brain Angular Gyrus	brain
13	chr10:93917400-93923400	Weak transcription	NHDF-Ad	bronchial
14	chr10:93917400-93926200	Weak transcription	Ovary	ovary
15	chr10:93917600-93925400	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr10:93918200-93926200	Weak transcription	Stomach Smooth Muscle	stomach
17	chr10:93920800-93926200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr10:93921200-93926000	Weak transcription	Fetal Brain Male	brain
19	chr10:93921400-93926200	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr10:93922000-93924400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr10:93922400-93922800	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr10:93922600-93923000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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