Variant report

Variant	rs12221454
Chromosome Location	chr10:93899687-93899688
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10509643	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12262492	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12267769	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2182647	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051226	chr10:93711296-93915586	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv540745	chr10:93711296-93915586	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93859200-93901400	Weak transcription	Primary B cells from cord blood	blood
2	chr10:93868000-93901800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:93885400-93902000	Weak transcription	NHLF	lung
4	chr10:93885400-93902200	Weak transcription	Brain Angular Gyrus	brain
5	chr10:93885400-93902200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr10:93885400-93902400	Weak transcription	Brain Substantia Nigra	brain
7	chr10:93885400-93906400	Weak transcription	Aorta	Aorta
8	chr10:93885400-93906600	Weak transcription	Spleen	Spleen
9	chr10:93885400-93908400	Weak transcription	Lung	lung
10	chr10:93885600-93902200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr10:93885800-93905600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr10:93886000-93902000	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr10:93886200-93902200	Weak transcription	Brain Anterior Caudate	brain
14	chr10:93886200-93906000	Weak transcription	Esophagus	oesophagus
15	chr10:93886200-93906400	Weak transcription	Stomach Smooth Muscle	stomach
16	chr10:93886200-93906600	Weak transcription	Right Ventricle	heart
17	chr10:93886200-93907800	Weak transcription	Psoas Muscle	Psoas
18	chr10:93886200-93910800	Weak transcription	Pancreas	Pancrea
19	chr10:93886200-93911600	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr10:93886400-93901800	Weak transcription	Hela-S3	cervix
21	chr10:93887400-93902200	Weak transcription	Left Ventricle	heart
22	chr10:93889000-93901800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr10:93891400-93902400	Weak transcription	HepG2	liver
24	chr10:93891400-93906600	Weak transcription	Liver	Liver
25	chr10:93892200-93902200	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr10:93892600-93911000	Weak transcription	Fetal Heart	heart
27	chr10:93893600-93901400	Weak transcription	Primary B cells from peripheral blood	blood
28	chr10:93895000-93909000	Weak transcription	Rectal Smooth Muscle	rectum
29	chr10:93895400-93906800	Weak transcription	Brain Germinal Matrix	brain
30	chr10:93895600-93901800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr10:93895600-93902600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr10:93896000-93902000	Weak transcription	Osteobl	bone
33	chr10:93896400-93902400	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr10:93896800-93902200	Weak transcription	Ovary	ovary
35	chr10:93896800-93903800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr10:93897000-93900400	Weak transcription	Fetal Intestine Small	intestine
37	chr10:93897000-93904000	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr10:93897200-93904200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr10:93897400-93901600	Weak transcription	GM12878-XiMat	blood
40	chr10:93897400-93906200	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr10:93897600-93905600	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr10:93898000-93902000	Weak transcription	Colon Smooth Muscle	Colon
43	chr10:93898000-93905400	Weak transcription	Adipose Nuclei	Adipose
44	chr10:93898200-93901400	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr10:93898200-93901400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr10:93898200-93901400	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr10:93898200-93906600	Weak transcription	Gastric	stomach
48	chr10:93898200-93926200	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr10:93898400-93900800	Weak transcription	Fetal Stomach	stomach

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