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Variant report
Variant
rs12259047
Chromosome Location
chr10:22500482-22500483
allele
C/T
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:1)
CpG islands (count:0)
Chromatin interactive region (count:2)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
No.
Transcrition factor
Chromosome Location
Cell Line
Cell type
Cell Stage
Matched TF binding sites
1
CEBPB
chr10:22500472-22500543
K562
blood:
n/a
n/a
No data
(count:2 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
chr10:22499848..22502632-chr10:22502756..22504450,3
K562
blood:
2
chr10:22375898..22377532-chr10:22500069..22502675,2
MCF-7
breast:
No data
No data
No data
Variant related genes
Relation type
EBLN1
TF binding region
Extended variants information (count: 7 )
Associated traits (count: 0)
rSNPs within LD-proxies of this variant (count:7)
rs_ID
r
2
[population]
rs10466080
0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11012891
0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11012893
1.00[AFR][1000 genomes]
rs11012899
0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12249656
1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56971787
0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74121381
0.81[AFR][1000 genomes]
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links