Variant report

Variant	rs12259477
Chromosome Location	chr10:91427363-91427364
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91426396..91428271-chr10:91428342..91432037,3	MCF-7	breast:
2	chr10:91427349..91430030-chr10:91442278..91445461,3	K562	blood:
3	chr10:91403557..91405807-chr10:91422817..91427702,4	MCF-7	breast:
4	chr10:91427066..91429091-chr10:91459571..91461477,2	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PANK1-2	chr10:91426944-91428008	XLOC_008897
2	lnc-PANK1-2	chr10:91426938-91428008	ENSG00000235100.3

No data

No data

Variant related genes	Relation type
ENSG00000152782	Chromatin interaction
ENSG00000249962	Chromatin interaction
ENSG00000138182	Chromatin interaction
ENSG00000232936	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10047318	1.00[AMR][1000 genomes]
rs12246132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12246192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12247535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12249849	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12250250	1.00[AFR][1000 genomes]
rs12253906	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs12255894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12258258	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12260995	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91424400-91428000	Weak transcription	Fetal Heart	heart
2	chr10:91424600-91428200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:91425400-91428400	Weak transcription	Fetal Muscle Leg	muscle
4	chr10:91425400-91430000	Weak transcription	HSMMtube	muscle
5	chr10:91425800-91428200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr10:91425800-91428200	Weak transcription	HMEC	breast
7	chr10:91425800-91428200	Weak transcription	NHEK	skin
8	chr10:91426000-91428200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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