Variant report

Variant	rs12260156
Chromosome Location	chr10:50385996-50385997
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:50384432..50385996-chr10:50507928..50509644,2	K562	blood:
2	chr10:50372843..50375654-chr10:50384413..50387038,2	MCF-7	breast:
3	chr10:50384969..50387621-chr10:50504946..50509741,4	K562	blood:

Variant related genes	Relation type
ENSG00000177354	Chromatin interaction
ENSG00000204161	Chromatin interaction
ENSG00000236208	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12245163	0.83[YRI][hapmap]
rs2247064	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50372800-50386200	Weak transcription	Pancreas	Pancrea
2	chr10:50376800-50395200	Enhancers	Primary B cells from peripheral blood	blood
3	chr10:50378000-50386000	Enhancers	Fetal Muscle Leg	muscle
4	chr10:50378000-50388600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr10:50380400-50386600	Enhancers	Right Ventricle	heart
6	chr10:50380600-50386400	Enhancers	Fetal Muscle Trunk	muscle
7	chr10:50381800-50394800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr10:50382200-50386600	Enhancers	Left Ventricle	heart
9	chr10:50382200-50390000	Enhancers	K562	blood
10	chr10:50383400-50386200	Enhancers	Placenta	Placenta
11	chr10:50383400-50386600	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr10:50383400-50395200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr10:50383800-50387200	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr10:50384000-50386200	Enhancers	Colonic Mucosa	Colon
15	chr10:50384000-50386600	Enhancers	NHDF-Ad	bronchial
16	chr10:50384200-50386000	Enhancers	Brain Anterior Caudate	brain
17	chr10:50384200-50386200	Bivalent Enhancer	Fetal Stomach	stomach
18	chr10:50384200-50386400	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr10:50384200-50386600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr10:50384200-50386600	Enhancers	Lung	lung
21	chr10:50384200-50387000	Enhancers	Adipose Nuclei	Adipose
22	chr10:50384200-50387000	Enhancers	Brain Substantia Nigra	brain
23	chr10:50384200-50389600	Enhancers	Primary B cells from cord blood	blood
24	chr10:50384400-50386200	Enhancers	Brain Angular Gyrus	brain
25	chr10:50384400-50386800	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr10:50384400-50396000	Enhancers	Primary neutrophils fromperipheralblood	blood
27	chr10:50384600-50386000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr10:50384600-50386400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr10:50384600-50386600	Enhancers	Primary T cells fromperipheralblood	blood
30	chr10:50384600-50387200	Enhancers	Dnd41	blood
31	chr10:50384800-50386000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr10:50384800-50386000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
33	chr10:50384800-50386000	Enhancers	Fetal Thymus	thymus
34	chr10:50384800-50386200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
35	chr10:50384800-50386200	Enhancers	Primary T killer memory cells from peripheral blood	blood
36	chr10:50384800-50386400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr10:50384800-50386400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr10:50384800-50386400	Enhancers	NHLF	lung
39	chr10:50384800-50386600	Enhancers	Duodenum Smooth Muscle	Duodenum
40	chr10:50384800-50386600	Enhancers	Rectal Mucosa Donor 29	rectum
41	chr10:50384800-50387600	Enhancers	Primary monocytes fromperipheralblood	blood
42	chr10:50384800-50388600	Enhancers	Spleen	Spleen
43	chr10:50385000-50386000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr10:50385000-50386000	Enhancers	Primary hematopoietic stem cells	blood
45	chr10:50385000-50386000	Enhancers	Fetal Intestine Small	intestine
46	chr10:50385000-50386200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr10:50385000-50386200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
48	chr10:50385000-50386200	Enhancers	Brain Cingulate Gyrus	brain
49	chr10:50385000-50386200	Enhancers	HMEC	breast
50	chr10:50385000-50386400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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