Variant report

Variant	rs12245163
Chromosome Location	chr10:50280039-50280040
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50277084..50281077-chr10:50281316..50285114,4	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12260156	0.83[YRI][hapmap]
rs1913520	1.00[AMR][1000 genomes]
rs2245271	0.89[AMR][1000 genomes]
rs2466753	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	esv2761593	chr10:50276812-50336129	Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50247000-50282600	Weak transcription	Brain Angular Gyrus	brain
2	chr10:50266600-50289400	Weak transcription	Colonic Mucosa	Colon
3	chr10:50267200-50288400	Weak transcription	NHLF	lung
4	chr10:50270600-50284200	Weak transcription	Fetal Intestine Large	intestine
5	chr10:50271600-50285200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr10:50272200-50283200	Weak transcription	Brain Anterior Caudate	brain
7	chr10:50272400-50283000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr10:50272600-50294200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:50273600-50289800	Weak transcription	NHDF-Ad	bronchial
10	chr10:50276600-50288200	Weak transcription	Gastric	stomach
11	chr10:50277200-50281800	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr10:50277400-50284400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr10:50277600-50287200	Weak transcription	K562	blood
14	chr10:50278400-50281000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr10:50278600-50280600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr10:50278600-50280600	Enhancers	NHEK	skin
17	chr10:50278600-50281000	Enhancers	HMEC	breast
18	chr10:50278600-50281600	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr10:50278800-50280200	Enhancers	Right Atrium	heart
20	chr10:50278800-50281400	Enhancers	Esophagus	oesophagus
21	chr10:50278800-50282800	Strong transcription	HSMMtube	muscle
22	chr10:50279000-50281600	Enhancers	Right Ventricle	heart
23	chr10:50279000-50284200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr10:50279600-50280200	Genic enhancers	Stomach Smooth Muscle	stomach
25	chr10:50279600-50280600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr10:50279600-50280800	Strong transcription	Brain Cingulate Gyrus	brain
27	chr10:50279600-50284600	Strong transcription	Aorta	Aorta
28	chr10:50279600-50284800	Weak transcription	Liver	Liver
29	chr10:50279600-50284800	Weak transcription	Thymus	Thymus
30	chr10:50279600-50285000	Strong transcription	Adipose Nuclei	Adipose
31	chr10:50279600-50285000	Strong transcription	Fetal Intestine Small	intestine
32	chr10:50279600-50285400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr10:50279600-50289200	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr10:50279800-50280200	Weak transcription	Lung	lung
35	chr10:50279800-50280400	Weak transcription	Colon Smooth Muscle	Colon
36	chr10:50279800-50280600	Strong transcription	Rectal Smooth Muscle	rectum
37	chr10:50279800-50280800	Strong transcription	Brain Inferior Temporal Lobe	brain
38	chr10:50279800-50281000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr10:50279800-50281200	Weak transcription	Fetal Brain Male	brain
40	chr10:50279800-50281600	Strong transcription	Fetal Muscle Leg	muscle
41	chr10:50279800-50282400	Strong transcription	Fetal Muscle Trunk	muscle
42	chr10:50279800-50283800	Strong transcription	Fetal Lung	lung
43	chr10:50279800-50285600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr10:50279800-50288600	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr10:50280000-50280200	Weak transcription	Spleen	Spleen
46	chr10:50280000-50282600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr10:50280000-50282600	Weak transcription	Ovary	ovary
48	chr10:50280000-50282800	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr10:50280000-50283600	Weak transcription	Left Ventricle	heart
50	chr10:50280000-50283800	Weak transcription	Brain Hippocampus Middle	brain

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