Variant report

Variant	rs12260220
Chromosome Location	chr10:89818467-89818468
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10082505	1.00[EUR][1000 genomes]
rs10887764	1.00[EUR][1000 genomes]
rs11202609	1.00[EUR][1000 genomes]
rs12245922	1.00[EUR][1000 genomes]
rs12254375	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12266639	0.90[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12267296	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12267986	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17107001	1.00[EUR][1000 genomes]
rs17107960	0.85[ASN][1000 genomes]
rs2673823	0.90[CHB][hapmap]
rs4258291	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59563535	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60782486	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73336617	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73336632	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89802600-89822200	Weak transcription	Aorta	Aorta
2	chr10:89803400-89822000	Weak transcription	Psoas Muscle	Psoas
3	chr10:89814800-89820000	Weak transcription	Primary B cells from cord blood	blood
4	chr10:89818000-89819000	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr10:89818000-89819000	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr10:89818200-89822200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr10:89818400-89818600	Enhancers	Spleen	Spleen
8	chr10:89818400-89818800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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