Variant report

Variant	rs12267986
Chromosome Location	chr10:89806159-89806160
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89622313..89624221-chr10:89805339..89808054,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171862	Chromatin interaction
ENSG00000227268	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10082505	1.00[EUR][1000 genomes]
rs10887764	1.00[EUR][1000 genomes]
rs11202609	1.00[EUR][1000 genomes]
rs12245922	1.00[EUR][1000 genomes]
rs12254375	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12260220	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12266639	0.85[ASW][hapmap];0.90[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.84[MKK][hapmap];0.86[YRI][hapmap];0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12267296	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17107001	1.00[EUR][1000 genomes]
rs17107960	0.92[ASN][1000 genomes]
rs2673823	0.90[CHB][hapmap]
rs4258291	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59563535	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60782486	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73336617	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73336632	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89801600-89808400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr10:89802200-89806600	Enhancers	Primary hematopoietic stem cells	blood
3	chr10:89802400-89806200	Weak transcription	Right Atrium	heart
4	chr10:89802600-89822200	Weak transcription	Aorta	Aorta
5	chr10:89803400-89822000	Weak transcription	Psoas Muscle	Psoas
6	chr10:89803600-89806200	Weak transcription	Lung	lung
7	chr10:89803600-89806600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr10:89803600-89807800	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr10:89804600-89807200	Enhancers	Fetal Thymus	thymus
10	chr10:89804800-89806800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr10:89805000-89806200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:89805000-89806400	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr10:89805000-89806400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr10:89805000-89807200	Enhancers	Fetal Muscle Leg	muscle
15	chr10:89805000-89808400	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr10:89805200-89806400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr10:89805200-89806600	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr10:89805400-89806200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr10:89805400-89806200	Weak transcription	Brain Hippocampus Middle	brain
20	chr10:89805600-89806400	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr10:89805600-89806400	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr10:89805600-89806600	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr10:89805600-89806600	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr10:89805800-89806200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
25	chr10:89805800-89806200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr10:89805800-89806400	Flanking Active TSS	Adipose Nuclei	Adipose
27	chr10:89806000-89806200	Enhancers	Spleen	Spleen
28	chr10:89806000-89806400	Flanking Active TSS	Dnd41	blood

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