Variant report

Variant	rs12260444
Chromosome Location	chr10:22842265-22842266
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22839689..22842283-chr10:23342301..23346033,4	K562	blood:
2	chr10:22629512..22631971-chr10:22842069..22844091,2	MCF-7	breast:
3	chr10:22628847..22631425-chr10:22840883..22842764,2	MCF-7	breast:
4	chr10:22836119..22838816-chr10:22841723..22844142,3	K562	blood:
5	chr10:22627151..22628805-chr10:22841570..22843241,2	K562	blood:
6	chr10:22738855..22740957-chr10:22839794..22842697,2	MCF-7	breast:
7	chr10:22842052..22844962-chr10:22849749..22851809,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272366	Chromatin interaction

rs_ID	r²[population]
rs11013063	1.00[YRI][hapmap]
rs11013064	1.00[YRI][hapmap]
rs12252545	1.00[YRI][hapmap]
rs12254487	1.00[YRI][hapmap]
rs12256497	1.00[AFR][1000 genomes]
rs12257835	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12258324	1.00[AFR][1000 genomes]
rs12261558	1.00[YRI][hapmap]
rs12265213	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12267076	1.00[YRI][hapmap]
rs12267604	1.00[YRI][hapmap]

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22822200-22856000	Weak transcription	Small Intestine	intestine
2	chr10:22822800-22870200	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr10:22823000-22844600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr10:22823400-22845200	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr10:22823800-22845200	Strong transcription	Primary T helper cells PMA-I stimulated	--
6	chr10:22824000-22844400	Strong transcription	Primary B cells from cord blood	blood
7	chr10:22824000-22844800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr10:22824000-22853000	Strong transcription	Primary T helper cells fromperipheralblood	blood
9	chr10:22824400-22845400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr10:22825000-22852800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr10:22825000-22863800	Weak transcription	Hela-S3	cervix
12	chr10:22825600-22843800	Weak transcription	Stomach Mucosa	stomach
13	chr10:22825600-22888000	Weak transcription	HMEC	breast
14	chr10:22825800-22843600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr10:22826000-22843400	Weak transcription	Fetal Brain Female	brain
16	chr10:22826200-22843600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr10:22826600-22843400	Weak transcription	Colonic Mucosa	Colon
18	chr10:22829000-22887400	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr10:22830600-22842400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr10:22830600-22853000	Weak transcription	HUVEC	blood vessel
21	chr10:22830800-22861000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr10:22831200-22842800	Weak transcription	Ovary	ovary
23	chr10:22831200-22843200	Weak transcription	NHLF	lung
24	chr10:22831200-22843600	Weak transcription	Esophagus	oesophagus
25	chr10:22831200-22856400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr10:22831600-22842800	Weak transcription	Rectal Smooth Muscle	rectum
27	chr10:22831800-22852600	Weak transcription	A549	lung
28	chr10:22832200-22843600	Weak transcription	Pancreas	Pancrea
29	chr10:22834000-22843400	Weak transcription	Psoas Muscle	Psoas
30	chr10:22834000-22843600	Weak transcription	Right Ventricle	heart
31	chr10:22834000-22843800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr10:22834000-22844200	Strong transcription	Primary hematopoietic stem cells	blood
33	chr10:22834200-22845400	Strong transcription	Primary B cells from peripheral blood	blood
34	chr10:22834200-22845400	Strong transcription	GM12878-XiMat	blood
35	chr10:22834600-22844200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
36	chr10:22834800-22853200	Strong transcription	Primary T cells fromperipheralblood	blood
37	chr10:22835000-22844400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr10:22836600-22842800	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr10:22836800-22843400	Weak transcription	Aorta	Aorta
40	chr10:22836800-22843400	Weak transcription	NHDF-Ad	bronchial
41	chr10:22836800-22843600	Weak transcription	Fetal Intestine Large	intestine
42	chr10:22836800-22843600	Weak transcription	Placenta	Placenta
43	chr10:22836800-22843600	Weak transcription	Lung	lung
44	chr10:22836800-22856200	Weak transcription	HepG2	liver
45	chr10:22837200-22848800	Weak transcription	Duodenum Mucosa	Duodenum
46	chr10:22837600-22843200	Weak transcription	NH-A	brain
47	chr10:22837800-22842800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr10:22837800-22844000	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr10:22838000-22843000	Weak transcription	Adipose Nuclei	Adipose
50	chr10:22838000-22851600	Weak transcription	Spleen	Spleen

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