Variant report

Variant	rs11013064
Chromosome Location	chr10:22896345-22896346
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22878706..22881547-chr10:22895040..22897400,2	MCF-7	breast:
2	chr10:22894422..22896822-chr10:23343724..23345259,2	K562	blood:
3	chr10:22894884..22897373-chr10:22931733..22933332,2	K562	blood:

Variant related genes	Relation type
ENSG00000150867	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11013063	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12243216	0.83[AFR][1000 genomes]
rs12243259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12243273	0.83[AFR][1000 genomes]
rs12251967	1.00[AMR][1000 genomes]
rs12252048	1.00[AMR][1000 genomes]
rs12252545	1.00[YRI][hapmap]
rs12254487	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12256497	1.00[AMR][1000 genomes]
rs12257835	1.00[YRI][hapmap]
rs12260400	1.00[AMR][1000 genomes]
rs12260444	1.00[YRI][hapmap]
rs12261558	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12264146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12264865	0.83[AFR][1000 genomes]
rs12265213	1.00[YRI][hapmap]
rs12266247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12267076	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12267604	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs13376745	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22844200-22904800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr10:22856600-22899200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr10:22858200-22904000	Weak transcription	Colonic Mucosa	Colon
4	chr10:22862400-22902000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:22877200-22896400	Weak transcription	Fetal Intestine Large	intestine
6	chr10:22880000-22906800	Weak transcription	Colon Smooth Muscle	Colon
7	chr10:22880200-22897000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr10:22880400-22896600	Weak transcription	Liver	Liver
9	chr10:22883200-22899200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr10:22886600-22896800	Weak transcription	HSMMtube	muscle
11	chr10:22887200-22902400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr10:22888800-22898000	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr10:22888800-22905000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr10:22889000-22896800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr10:22889400-22904400	Weak transcription	Hela-S3	cervix
16	chr10:22891000-22896800	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr10:22891000-22897000	Weak transcription	Fetal Intestine Small	intestine
18	chr10:22891000-22901400	Weak transcription	Gastric	stomach
19	chr10:22891000-22904800	Weak transcription	Right Ventricle	heart
20	chr10:22891200-22904800	Weak transcription	NHLF	lung
21	chr10:22891600-22897600	Weak transcription	Left Ventricle	heart
22	chr10:22892600-22896400	Enhancers	Brain Cingulate Gyrus	brain
23	chr10:22893200-22896600	Genic enhancers	Primary T cells from cord blood	blood
24	chr10:22893200-22897000	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr10:22893600-22897800	Weak transcription	Fetal Lung	lung
26	chr10:22893600-22902000	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr10:22893800-22896400	Enhancers	HMEC	breast
28	chr10:22894000-22896400	Enhancers	Muscle Satellite Cultured Cells	--
29	chr10:22894000-22897000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr10:22894000-22897000	Weak transcription	Lung	lung
31	chr10:22894000-22898800	Weak transcription	Spleen	Spleen
32	chr10:22894000-22902600	Weak transcription	Right Atrium	heart
33	chr10:22894000-22906600	Weak transcription	Ovary	ovary
34	chr10:22894200-22896800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr10:22894200-22898400	Weak transcription	Small Intestine	intestine
36	chr10:22894200-22904600	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr10:22894600-22896400	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr10:22894600-22896400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr10:22894600-22896600	Genic enhancers	Dnd41	blood
40	chr10:22894600-22896600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
41	chr10:22894600-22897600	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr10:22894600-22899000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr10:22894600-22903000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr10:22894600-22904400	Weak transcription	NHDF-Ad	bronchial
45	chr10:22894600-22904600	Weak transcription	NHEK	skin
46	chr10:22894600-22905000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr10:22894800-22899400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr10:22894800-22904600	Weak transcription	Adipose Nuclei	Adipose
49	chr10:22894800-22913000	Weak transcription	Fetal Kidney	kidney
50	chr10:22895200-22896400	Genic enhancers	A549	lung

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