Variant report

Variant	rs13376745
Chromosome Location	chr10:22912743-22912744
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22911051..22913869-chr10:23344433..23348720,3	K562	blood:
2	chr10:22897477..22901298-chr10:22912360..22915668,3	K562	blood:
3	chr10:22910882..22913408-chr10:23001985..23003913,2	K562	blood:
4	chr10:22911464..22914418-chr10:23001994..23003739,2	MCF-7	breast:
5	chr10:22912213..22914953-chr10:22971125..22973700,2	MCF-7	breast:
6	chr10:22878584..22881570-chr10:22912031..22913638,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150867	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11013038	1.00[ASN][1000 genomes]
rs11013063	1.00[AMR][1000 genomes]
rs11013064	1.00[AMR][1000 genomes]
rs11013071	1.00[ASN][1000 genomes]
rs11812735	1.00[ASN][1000 genomes]
rs11816335	1.00[ASN][1000 genomes]
rs12243259	1.00[AMR][1000 genomes]
rs12251967	1.00[AMR][1000 genomes]
rs12252048	1.00[AMR][1000 genomes]
rs12256497	1.00[AMR][1000 genomes]
rs12260388	1.00[ASN][1000 genomes]
rs12260400	1.00[AMR][1000 genomes]
rs12264146	1.00[AMR][1000 genomes]
rs12266247	1.00[AMR][1000 genomes]
rs8412	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22894800-22913000	Weak transcription	Fetal Kidney	kidney
2	chr10:22901600-22918200	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr10:22901800-22913000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr10:22901800-22918800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr10:22902400-22921600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr10:22903800-22922000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr10:22904000-22913200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr10:22905000-22914400	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr10:22905000-22918600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr10:22905200-22912800	Weak transcription	Colonic Mucosa	Colon
11	chr10:22905200-22919400	Enhancers	NHDF-Ad	bronchial
12	chr10:22905400-22913800	Enhancers	Brain Anterior Caudate	brain
13	chr10:22905400-22914400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr10:22905400-22915400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr10:22906400-22918200	Enhancers	NHLF	lung
16	chr10:22906600-22912800	Enhancers	Placenta	Placenta
17	chr10:22906600-22913600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr10:22907600-22913000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr10:22907600-22922400	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr10:22907800-22914400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr10:22907800-22919000	Weak transcription	Duodenum Mucosa	Duodenum
22	chr10:22908000-22913200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr10:22908000-22914400	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr10:22908200-22918000	Weak transcription	Primary B cells from cord blood	blood
25	chr10:22908600-22914600	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr10:22908800-22916200	Weak transcription	Liver	Liver
27	chr10:22908800-22918200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr10:22909000-22913600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
29	chr10:22909400-22913600	Enhancers	Fetal Thymus	thymus
30	chr10:22909600-22912800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr10:22909600-22913400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr10:22909800-22917000	Enhancers	HUVEC	blood vessel
33	chr10:22909800-22917600	Weak transcription	Thymus	Thymus
34	chr10:22909800-22930400	Weak transcription	Fetal Stomach	stomach
35	chr10:22910000-22913000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
36	chr10:22910000-22913200	Enhancers	A549	lung
37	chr10:22910000-22913600	Weak transcription	Stomach Smooth Muscle	stomach
38	chr10:22910000-22914000	Enhancers	Brain Inferior Temporal Lobe	brain
39	chr10:22910000-22914800	Weak transcription	Psoas Muscle	Psoas
40	chr10:22910000-22916200	Weak transcription	Stomach Mucosa	stomach
41	chr10:22910000-22916400	Enhancers	Brain Angular Gyrus	brain
42	chr10:22910000-22918600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
43	chr10:22910200-22912800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr10:22910200-22913200	Weak transcription	Rectal Smooth Muscle	rectum
45	chr10:22910200-22913400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr10:22910200-22914400	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr10:22910200-22914400	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr10:22910200-22914600	Weak transcription	Right Ventricle	heart
49	chr10:22910200-22915800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr10:22910200-22919000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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