Variant report

Variant	rs12263225
Chromosome Location	chr10:21626899-21626900
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:21626401..21627117-chr10:21783915..21784551,2	MCF-7	breast:
2	chr10:21626682..21628254-chr10:21631781..21633550,2	K562	blood:
3	chr10:21624338..21627195-chr10:21803332..21806134,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10466075	1.00[EUR][1000 genomes]
rs11012593	1.00[EUR][1000 genomes]
rs11012634	1.00[EUR][1000 genomes]
rs11012635	1.00[EUR][1000 genomes]
rs11012705	1.00[EUR][1000 genomes]
rs11012708	1.00[EUR][1000 genomes]
rs11012710	1.00[EUR][1000 genomes]
rs12241849	1.00[EUR][1000 genomes]
rs12242402	1.00[EUR][1000 genomes]
rs12244302	1.00[EUR][1000 genomes]
rs12244732	1.00[EUR][1000 genomes]
rs12247077	1.00[EUR][1000 genomes]
rs12247298	1.00[EUR][1000 genomes]
rs12253331	1.00[EUR][1000 genomes]
rs12261699	1.00[EUR][1000 genomes]
rs13377090	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58153156	1.00[EUR][1000 genomes]
rs73609241	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21621800-21627800	Enhancers	Placenta	Placenta
2	chr10:21623800-21627000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr10:21624200-21627800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:21625800-21629200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr10:21626000-21627000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr10:21626000-21627000	Enhancers	Hela-S3	cervix
7	chr10:21626000-21627000	Enhancers	HMEC	breast
8	chr10:21626000-21627000	Enhancers	NHEK	skin
9	chr10:21626000-21627200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr10:21626000-21627600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr10:21626000-21628600	Weak transcription	NHDF-Ad	bronchial
12	chr10:21626000-21629000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr10:21626000-21629000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:21626000-21629000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr10:21626000-21629200	Weak transcription	Osteobl	bone
16	chr10:21626000-21638800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr10:21626000-21638800	Weak transcription	Aorta	Aorta
18	chr10:21626400-21629200	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr10:21626400-21632200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr10:21626400-21638800	Weak transcription	Right Atrium	heart
21	chr10:21626400-21639200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr10:21626600-21627600	Genic enhancers	A549	lung
23	chr10:21626800-21628600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr10:21626800-21629000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr10:21626800-21629200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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