Variant report

Variant	rs13377090
Chromosome Location	chr10:21674946-21674947
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10466075	1.00[EUR][1000 genomes]
rs11012593	1.00[EUR][1000 genomes]
rs11012634	1.00[EUR][1000 genomes]
rs11012635	1.00[EUR][1000 genomes]
rs11012705	1.00[EUR][1000 genomes]
rs11012708	1.00[EUR][1000 genomes]
rs11012710	1.00[EUR][1000 genomes]
rs12241849	1.00[EUR][1000 genomes]
rs12242402	1.00[EUR][1000 genomes]
rs12244302	1.00[EUR][1000 genomes]
rs12244732	1.00[EUR][1000 genomes]
rs12247077	1.00[EUR][1000 genomes]
rs12247298	1.00[EUR][1000 genomes]
rs12253331	1.00[EUR][1000 genomes]
rs12261699	1.00[EUR][1000 genomes]
rs12263225	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58153156	1.00[EUR][1000 genomes]
rs6482187	1.00[EUR][1000 genomes]
rs73609241	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21654000-21676800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:21654200-21681400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:21673600-21677400	Enhancers	Placenta	Placenta
4	chr10:21674400-21676000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr10:21674600-21675000	Enhancers	A549	lung
6	chr10:21674600-21675400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr10:21674600-21675600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr10:21674600-21675600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr10:21674600-21677600	Enhancers	Placenta Amnion	Placenta Amnion
10	chr10:21674600-21678200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr10:21674800-21675000	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr10:21674800-21675400	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr10:21674800-21675400	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr10:21674800-21675600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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