Variant report

Variant	rs6482187
Chromosome Location	chr10:21876644-21876645
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10466075	1.00[EUR][1000 genomes]
rs11012705	1.00[EUR][1000 genomes]
rs11012708	1.00[EUR][1000 genomes]
rs11012710	1.00[EUR][1000 genomes]
rs13377090	1.00[EUR][1000 genomes]
rs16921884	1.00[EUR][1000 genomes]
rs16921910	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052477	chr10:21810270-21889726	Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1036585	chr10:21833717-21998042	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv550202	chr10:21856475-22027644	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1052464	chr10:21856531-22220087	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	esv1802317	chr10:21866085-22288132	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv894947	chr10:21869609-22117913	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	esv1792771	chr10:21874152-22013644	Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21824600-21930400	Weak transcription	Gastric	stomach
2	chr10:21839400-21878200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr10:21839800-21880200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr10:21840000-21877200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr10:21841200-21897200	Weak transcription	Fetal Kidney	kidney
6	chr10:21842200-21897200	Weak transcription	Fetal Brain Male	brain
7	chr10:21844600-21896600	Weak transcription	Hela-S3	cervix
8	chr10:21846800-21882200	Weak transcription	Brain Germinal Matrix	brain
9	chr10:21846800-21889600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:21846800-21892800	Weak transcription	HSMMtube	muscle
11	chr10:21846800-21913600	Weak transcription	Rectal Smooth Muscle	rectum
12	chr10:21847000-21901200	Weak transcription	HUVEC	blood vessel
13	chr10:21848800-21914200	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr10:21849400-21889600	Weak transcription	NHEK	skin
15	chr10:21849400-21913600	Weak transcription	Esophagus	oesophagus
16	chr10:21849800-21889400	Weak transcription	Brain Hippocampus Middle	brain
17	chr10:21849800-21894600	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr10:21849800-21897000	Weak transcription	Fetal Brain Female	brain
19	chr10:21850800-21889600	Weak transcription	HMEC	breast
20	chr10:21856600-21877400	Weak transcription	Fetal Lung	lung
21	chr10:21856800-21913400	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr10:21859400-21889800	Weak transcription	Pancreas	Pancrea
23	chr10:21860400-21886600	Weak transcription	Small Intestine	intestine
24	chr10:21860600-21879000	Weak transcription	Lung	lung
25	chr10:21860600-21895400	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr10:21860800-21878200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr10:21861200-21883000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr10:21861200-21890000	Weak transcription	Colon Smooth Muscle	Colon
29	chr10:21861400-21898400	Weak transcription	Brain Angular Gyrus	brain
30	chr10:21861400-21902800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr10:21861800-21878800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr10:21861800-21889600	Weak transcription	Brain Cingulate Gyrus	brain
33	chr10:21861800-21895400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr10:21861800-21898400	Weak transcription	Brain Anterior Caudate	brain
35	chr10:21861800-21913800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr10:21862200-21894200	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr10:21862400-21881600	Weak transcription	Stomach Smooth Muscle	stomach
38	chr10:21862400-21913600	Weak transcription	Adipose Nuclei	Adipose
39	chr10:21862400-21916400	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr10:21862800-21882000	Weak transcription	Ovary	ovary
41	chr10:21862800-21882200	Weak transcription	Primary T cells from cord blood	blood
42	chr10:21863800-21889000	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr10:21866000-21913600	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr10:21870200-21882600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr10:21870600-21877800	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr10:21870600-21889800	Weak transcription	NHLF	lung
47	chr10:21870600-21900600	Weak transcription	Right Ventricle	heart
48	chr10:21870800-21879800	Weak transcription	Primary B cells from peripheral blood	blood
49	chr10:21870800-21895000	Weak transcription	Osteobl	bone
50	chr10:21871000-21895000	Weak transcription	NH-A	brain

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