Variant report

Variant	rs12264621
Chromosome Location	chr10:28508787-28508788
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:28508575..28511096-chr10:28514508..28517306,2	MCF-7	breast:
2	chr10:28503327..28506252-chr10:28507179..28508857,2	MCF-7	breast:
3	chr10:28505448..28507000-chr10:28508709..28511532,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11006925	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11006943	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11006944	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11006978	0.80[YRI][hapmap]
rs12244014	0.81[AFR][1000 genomes]
rs12245970	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12248194	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12252045	1.00[ASW][hapmap];0.81[AFR][1000 genomes]
rs12253728	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12255835	0.81[AFR][1000 genomes]
rs12257713	0.81[AFR][1000 genomes]
rs12268225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12268288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58397019	0.81[AFR][1000 genomes]
rs73608073	0.81[AFR][1000 genomes]
rs73608076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73608077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73608078	0.81[AFR][1000 genomes]
rs73608079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv525448	chr10:28337570-28563732	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv831817	chr10:28369836-28539930	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
6	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
7	nsv6188	chr10:28489076-28514068	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv3494702	chr10:28502096-28512894	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3494704	chr10:28502496-28512794	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3494700	chr10:28502799-28512747	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3314296	chr10:28502956-28512061	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3314308	chr10:28502956-28512061	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3514591	chr10:28503047-28511888	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3494699	chr10:28503097-28511918	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3494701	chr10:28503107-28511884	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv3494705	chr10:28503162-28511857	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3514592	chr10:28503162-28511857	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv3494703	chr10:28503269-28511812	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv498723	chr10:28503272-28511810	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv3494706	chr10:28503273-28511810	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv14688	chr10:28504295-28511827	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28467600-28525600	Weak transcription	Aorta	Aorta
2	chr10:28487600-28529000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr10:28491200-28523200	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr10:28498200-28531200	Weak transcription	Primary B cells from cord blood	blood
5	chr10:28498200-28537000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr10:28502000-28531600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr10:28502400-28523000	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr10:28502400-28525000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr10:28503800-28515600	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr10:28504600-28509400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr10:28505200-28508800	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr10:28505200-28512000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:28506000-28516000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr10:28507000-28509000	Enhancers	Placenta Amnion	Placenta Amnion
15	chr10:28507200-28509200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr10:28507200-28509600	Enhancers	Rectal Smooth Muscle	rectum
17	chr10:28507200-28528600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr10:28507400-28509800	Enhancers	Muscle Satellite Cultured Cells	--
19	chr10:28507400-28510400	Enhancers	HSMM	muscle
20	chr10:28507400-28510800	Enhancers	HSMMtube	muscle
21	chr10:28507400-28516000	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr10:28507400-28516800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr10:28507400-28522000	Weak transcription	Primary T cells from cord blood	blood
24	chr10:28507400-28525400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr10:28507400-28530600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr10:28507600-28509400	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr10:28507600-28531000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr10:28508000-28509200	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr10:28508400-28508800	Enhancers	Hela-S3	cervix
30	chr10:28508600-28508800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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