Variant report

Variant	rs12268225
Chromosome Location	chr10:28522862-28522863
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10508730	1.00[EUR][1000 genomes]
rs11006925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11006943	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11006944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12244014	0.81[AFR][1000 genomes]
rs12245970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12248194	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12252045	0.81[AFR][1000 genomes]
rs12253728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12255835	0.81[AFR][1000 genomes]
rs12257713	0.81[AFR][1000 genomes]
rs12264621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12268288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12412297	1.00[EUR][1000 genomes]
rs17831032	0.90[EUR][1000 genomes]
rs17831062	0.90[EUR][1000 genomes]
rs41306320	1.00[EUR][1000 genomes]
rs57170335	0.90[EUR][1000 genomes]
rs57575764	1.00[EUR][1000 genomes]
rs58270577	1.00[EUR][1000 genomes]
rs58397019	0.81[AFR][1000 genomes]
rs58760717	0.90[EUR][1000 genomes]
rs59048411	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60301798	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60563943	0.90[EUR][1000 genomes]
rs60629234	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60695945	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61702002	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7090142	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73606064	1.00[EUR][1000 genomes]
rs73606068	0.90[EUR][1000 genomes]
rs73606069	0.90[EUR][1000 genomes]
rs73608073	0.81[AFR][1000 genomes]
rs73608076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73608077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73608078	0.81[AFR][1000 genomes]
rs73608079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv525448	chr10:28337570-28563732	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv831817	chr10:28369836-28539930	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
6	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28467600-28525600	Weak transcription	Aorta	Aorta
2	chr10:28487600-28529000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr10:28491200-28523200	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr10:28498200-28531200	Weak transcription	Primary B cells from cord blood	blood
5	chr10:28498200-28537000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr10:28502000-28531600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr10:28502400-28523000	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr10:28502400-28525000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr10:28507200-28528600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr10:28507400-28525400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr10:28507400-28530600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr10:28507600-28531000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr10:28509800-28524000	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr10:28510200-28523200	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr10:28510800-28530400	Weak transcription	HSMMtube	muscle
16	chr10:28511000-28528800	Weak transcription	Fetal Heart	heart
17	chr10:28515600-28528000	Weak transcription	Gastric	stomach
18	chr10:28516000-28523000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr10:28516600-28527400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr10:28516800-28530400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr10:28518400-28531000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr10:28519000-28552000	Weak transcription	Fetal Stomach	stomach
23	chr10:28519800-28528800	Weak transcription	Fetal Intestine Large	intestine
24	chr10:28520400-28525600	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr10:28521200-28527600	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr10:28521200-28538600	Weak transcription	Left Ventricle	heart
27	chr10:28521800-28529800	Weak transcription	Fetal Intestine Small	intestine
28	chr10:28521800-28544400	Weak transcription	Pancreas	Pancrea
29	chr10:28522000-28526800	Strong transcription	Primary T cells from cord blood	blood
30	chr10:28522000-28527400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr10:28522000-28531400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr10:28522200-28525000	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr10:28522200-28527200	Weak transcription	Ovary	ovary
34	chr10:28522400-28537000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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