Variant report

Variant	rs61702002
Chromosome Location	chr10:28579572-28579573
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:28542308..28543962-chr10:28578219..28580065,2	MCF-7	breast:
2	chr10:28564267..28567183-chr10:28578724..28581652,3	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10508730	0.90[EUR][1000 genomes]
rs12268225	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12412297	0.90[EUR][1000 genomes]
rs17831032	0.81[EUR][1000 genomes]
rs17831062	0.81[EUR][1000 genomes]
rs41306320	0.90[EUR][1000 genomes]
rs57170335	1.00[EUR][1000 genomes]
rs57575764	0.90[EUR][1000 genomes]
rs57960262	0.83[EUR][1000 genomes]
rs58270577	0.90[EUR][1000 genomes]
rs58760717	1.00[EUR][1000 genomes]
rs59048411	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60301798	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60563943	0.81[EUR][1000 genomes]
rs60629234	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60695945	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7070461	0.81[AFR][1000 genomes]
rs7072729	1.00[AMR][1000 genomes]
rs7090142	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7094411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7094899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73606064	0.90[EUR][1000 genomes]
rs73606068	0.81[EUR][1000 genomes]
rs73606069	0.81[EUR][1000 genomes]
rs73608077	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7911943	0.81[AFR][1000 genomes]
rs7915875	0.81[AFR][1000 genomes]
rs7924121	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	nsv437663	chr10:28562647-28585496	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
6	nsv515548	chr10:28564732-28579969	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28550400-28582600	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr10:28571000-28580200	Weak transcription	Lung	lung
3	chr10:28571400-28584600	Weak transcription	Fetal Intestine Small	intestine
4	chr10:28571600-28580200	Weak transcription	Esophagus	oesophagus
5	chr10:28571600-28580200	Weak transcription	Left Ventricle	heart
6	chr10:28571600-28583800	Weak transcription	Fetal Muscle Leg	muscle
7	chr10:28571800-28580200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:28571800-28587800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr10:28572000-28580200	Weak transcription	Psoas Muscle	Psoas
10	chr10:28572000-28580400	Weak transcription	Aorta	Aorta
11	chr10:28572400-28582200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr10:28573600-28580200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr10:28573600-28581000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr10:28573600-28582600	Weak transcription	Primary T cells from cord blood	blood
15	chr10:28573600-28582600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr10:28573800-28581000	Weak transcription	Fetal Heart	heart
17	chr10:28573800-28587400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr10:28574000-28580000	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr10:28575600-28580200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr10:28575600-28580200	Weak transcription	Pancreas	Pancrea
21	chr10:28575800-28580200	Weak transcription	HSMMtube	muscle
22	chr10:28575800-28581000	Weak transcription	Stomach Smooth Muscle	stomach
23	chr10:28575800-28582000	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr10:28576400-28580000	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr10:28576400-28581000	Weak transcription	Colon Smooth Muscle	Colon
26	chr10:28576400-28582200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr10:28577800-28585200	Weak transcription	Gastric	stomach
28	chr10:28578400-28583000	Weak transcription	HepG2	liver
29	chr10:28578600-28583800	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr10:28578800-28582200	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr10:28579000-28580000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr10:28579000-28588400	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr10:28579400-28585000	Weak transcription	Stomach Mucosa	stomach

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