Variant report

Variant	rs7915875
Chromosome Location	chr10:28490854-28490855
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs60695945	0.90[AFR][1000 genomes]
rs61702002	0.81[AFR][1000 genomes]
rs7070461	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7087930	1.00[YRI][hapmap]
rs7094411	0.81[AFR][1000 genomes]
rs7094899	0.81[AFR][1000 genomes]
rs7906300	1.00[YRI][hapmap]
rs7911943	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1042524	chr10:28290149-28506812	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv831816	chr10:28304698-28493635	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv525448	chr10:28337570-28563732	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv831817	chr10:28369836-28539930	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
7	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
8	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
9	nsv6188	chr10:28489076-28514068	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28449800-28497000	Weak transcription	Fetal Intestine Small	intestine
2	chr10:28467600-28491800	Weak transcription	Psoas Muscle	Psoas
3	chr10:28467600-28525600	Weak transcription	Aorta	Aorta
4	chr10:28467800-28495200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr10:28469800-28491000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr10:28481000-28496400	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr10:28484600-28492400	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr10:28484600-28496800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr10:28485600-28504400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr10:28486800-28496200	Weak transcription	Primary B cells from cord blood	blood
11	chr10:28487600-28491200	Strong transcription	Primary neutrophils fromperipheralblood	blood
12	chr10:28487600-28497800	Weak transcription	HepG2	liver
13	chr10:28487600-28529000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr10:28487800-28491400	Strong transcription	Primary T cells from cord blood	blood
15	chr10:28487800-28492200	Enhancers	HSMMtube	muscle
16	chr10:28488600-28491600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr10:28488600-28491800	Enhancers	Hela-S3	cervix
18	chr10:28488600-28492200	Enhancers	HSMM	muscle
19	chr10:28488600-28500200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr10:28489000-28492200	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr10:28489000-28492600	Enhancers	Rectal Smooth Muscle	rectum
22	chr10:28489200-28491800	Weak transcription	Fetal Muscle Leg	muscle
23	chr10:28489200-28496800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr10:28489600-28492200	Enhancers	Fetal Lung	lung
25	chr10:28489600-28493400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr10:28489800-28504400	Weak transcription	Esophagus	oesophagus
27	chr10:28490000-28491000	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr10:28490200-28491800	Bivalent Enhancer	Osteobl	bone
29	chr10:28490200-28492200	Enhancers	Fetal Stomach	stomach
30	chr10:28490400-28491200	Strong transcription	Primary T helper cells PMA-I stimulated	--
31	chr10:28490600-28491000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr10:28490600-28491000	Enhancers	Muscle Satellite Cultured Cells	--
33	chr10:28490600-28491800	Weak transcription	Small Intestine	intestine
34	chr10:28490800-28491000	Flanking Active TSS	Colon Smooth Muscle	Colon
35	chr10:28490800-28491200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr10:28490800-28491400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr10:28490800-28491800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr10:28490800-28492000	Flanking Active TSS	Stomach Smooth Muscle	stomach
39	chr10:28490800-28492200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr10:28490800-28492400	Enhancers	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links