Variant report

Variant	rs12265854
Chromosome Location	chr10:91284294-91284295
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10881597	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10881598	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185740	0.95[YRI][hapmap];0.97[AFR][1000 genomes]
rs56077075	0.99[ASN][1000 genomes]
rs56310228	0.99[ASN][1000 genomes]
rs7076750	0.92[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes]
rs72816749	0.86[ASN][1000 genomes]
rs7897886	0.83[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[CHD][hapmap];0.90[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7922914	1.00[CEU][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91276400-91285600	Weak transcription	Fetal Intestine Large	intestine
2	chr10:91276600-91284400	Enhancers	Fetal Heart	heart
3	chr10:91278200-91285800	Weak transcription	Gastric	stomach
4	chr10:91278200-91286000	Weak transcription	Colon Smooth Muscle	Colon
5	chr10:91278200-91286400	Weak transcription	Lung	lung
6	chr10:91279400-91285400	Weak transcription	HSMMtube	muscle
7	chr10:91279400-91294800	Weak transcription	HSMM	muscle
8	chr10:91279600-91292000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr10:91280000-91284600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr10:91281200-91285400	Weak transcription	Fetal Intestine Small	intestine
11	chr10:91281200-91285800	Weak transcription	Ovary	ovary
12	chr10:91281600-91284600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr10:91282200-91285600	Weak transcription	Fetal Lung	lung
14	chr10:91282200-91285800	Weak transcription	Fetal Stomach	stomach
15	chr10:91282800-91284600	Enhancers	Pancreas	Pancrea
16	chr10:91283600-91284400	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr10:91283600-91285800	Weak transcription	Right Ventricle	heart
18	chr10:91283600-91286000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr10:91283600-91286400	Weak transcription	Right Atrium	heart
20	chr10:91283600-91294600	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr10:91283800-91285400	Weak transcription	Stomach Smooth Muscle	stomach
22	chr10:91284200-91284600	Enhancers	Left Ventricle	heart

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