Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10881598	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs11185783	1.00[ASN][1000 genomes]
rs11185816	1.00[ASN][1000 genomes]
rs11203091	1.00[CEU][hapmap]
rs12248961	1.00[ASN][1000 genomes]
rs12265854	0.95[YRI][hapmap];0.97[AFR][1000 genomes]
rs17124950	1.00[ASN][1000 genomes]
rs6586199	1.00[ASN][1000 genomes]
rs6586200	1.00[ASN][1000 genomes]
rs6586208	1.00[ASN][1000 genomes]
rs7070711	1.00[ASN][1000 genomes]
rs7071963	1.00[ASN][1000 genomes]
rs7076750	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7084776	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7091814	1.00[ASN][1000 genomes]
rs7094983	1.00[ASN][1000 genomes]
rs7099173	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7897230	1.00[ASN][1000 genomes]
rs7900905	1.00[ASN][1000 genomes]
rs7905978	1.00[ASN][1000 genomes]
rs7907554	1.00[ASN][1000 genomes]
rs7911174	1.00[ASN][1000 genomes]
rs7913785	1.00[ASN][1000 genomes]
rs7916734	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91276400-91285600	Weak transcription	Fetal Intestine Large	intestine
2	chr10:91278200-91285800	Weak transcription	Gastric	stomach
3	chr10:91278200-91286000	Weak transcription	Colon Smooth Muscle	Colon
4	chr10:91278200-91286400	Weak transcription	Lung	lung
5	chr10:91279400-91294800	Weak transcription	HSMM	muscle
6	chr10:91279600-91292000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr10:91281200-91285800	Weak transcription	Ovary	ovary
8	chr10:91282200-91285600	Weak transcription	Fetal Lung	lung
9	chr10:91282200-91285800	Weak transcription	Fetal Stomach	stomach
10	chr10:91283600-91285800	Weak transcription	Right Ventricle	heart
11	chr10:91283600-91286000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr10:91283600-91286400	Weak transcription	Right Atrium	heart
13	chr10:91283600-91294600	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr10:91284400-91285600	Weak transcription	Fetal Heart	heart
15	chr10:91284600-91285800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr10:91284600-91286400	Weak transcription	Left Ventricle	heart
17	chr10:91284600-91287400	Weak transcription	Pancreas	Pancrea
18	chr10:91285200-91291400	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr10:91285400-91285600	Enhancers	HSMMtube	muscle
20	chr10:91285400-91286000	Enhancers	Stomach Mucosa	stomach
21	chr10:91285400-91286200	Enhancers	Duodenum Mucosa	Duodenum
22	chr10:91285400-91287600	Enhancers	Fetal Intestine Small	intestine

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