Variant report

Variant	rs7099173
Chromosome Location	chr10:91282725-91282726
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11185740	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs11185783	1.00[ASN][1000 genomes]
rs11185816	1.00[ASN][1000 genomes]
rs11203091	1.00[CEU][hapmap]
rs12248961	1.00[ASN][1000 genomes]
rs17124950	1.00[ASN][1000 genomes]
rs6586199	1.00[ASN][1000 genomes]
rs6586200	1.00[ASN][1000 genomes]
rs6586208	1.00[ASN][1000 genomes]
rs7070711	1.00[ASN][1000 genomes]
rs7071963	1.00[ASN][1000 genomes]
rs7076750	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7084776	1.00[ASN][1000 genomes]
rs7091814	1.00[ASN][1000 genomes]
rs7094983	1.00[ASN][1000 genomes]
rs7897230	1.00[ASN][1000 genomes]
rs7900905	1.00[ASN][1000 genomes]
rs7905978	1.00[ASN][1000 genomes]
rs7907554	1.00[ASN][1000 genomes]
rs7911174	1.00[ASN][1000 genomes]
rs7913785	1.00[ASN][1000 genomes]
rs7916734	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91276400-91285600	Weak transcription	Fetal Intestine Large	intestine
2	chr10:91276600-91283000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr10:91276600-91284400	Enhancers	Fetal Heart	heart
4	chr10:91278200-91283000	Weak transcription	Aorta	Aorta
5	chr10:91278200-91285800	Weak transcription	Gastric	stomach
6	chr10:91278200-91286000	Weak transcription	Colon Smooth Muscle	Colon
7	chr10:91278200-91286400	Weak transcription	Lung	lung
8	chr10:91279200-91283000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:91279400-91285400	Weak transcription	HSMMtube	muscle
10	chr10:91279400-91294800	Weak transcription	HSMM	muscle
11	chr10:91279600-91292000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr10:91280000-91284600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr10:91281200-91283000	Weak transcription	Right Atrium	heart
14	chr10:91281200-91283600	Enhancers	NHLF	lung
15	chr10:91281200-91285400	Weak transcription	Fetal Intestine Small	intestine
16	chr10:91281200-91285800	Weak transcription	Ovary	ovary
17	chr10:91281600-91284600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr10:91281800-91283000	Weak transcription	Right Ventricle	heart
19	chr10:91282000-91283600	Enhancers	Muscle Satellite Cultured Cells	--
20	chr10:91282200-91283200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr10:91282200-91283600	Enhancers	NH-A	brain
22	chr10:91282200-91283800	Enhancers	Osteobl	bone
23	chr10:91282200-91284200	Weak transcription	Left Ventricle	heart
24	chr10:91282200-91285600	Weak transcription	Fetal Lung	lung
25	chr10:91282200-91285800	Weak transcription	Fetal Stomach	stomach
26	chr10:91282400-91282800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr10:91282400-91282800	Weak transcription	Pancreas	Pancrea
28	chr10:91282400-91283000	Weak transcription	Placenta	Placenta
29	chr10:91282400-91283600	Enhancers	Pancreatic Islets	Pancreatic Islet
30	chr10:91282400-91283600	Enhancers	HUVEC	blood vessel
31	chr10:91282600-91282800	Enhancers	NHDF-Ad	bronchial
32	chr10:91282600-91283000	Enhancers	Placenta Amnion	Placenta Amnion

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