Variant report

Variant	rs7913785
Chromosome Location	chr10:91348352-91348353
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91347329..91350012-chr10:91354291..91355825,2	MCF-7	breast:
2	chr10:91346501..91348407-chr10:91350515..91353203,2	K562	blood:

Variant related genes	Relation type
ENSG00000198997	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11185740	1.00[ASN][1000 genomes]
rs11185783	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185816	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12248961	1.00[ASN][1000 genomes]
rs17124950	1.00[CEU][hapmap];0.90[YRI][hapmap];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6586199	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6586200	0.91[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6586208	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7070711	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071963	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7076750	1.00[ASN][1000 genomes]
rs7084776	1.00[ASN][1000 genomes]
rs7091814	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7094983	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7099173	1.00[ASN][1000 genomes]
rs7897151	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7897230	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7900905	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7905978	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7907554	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7911174	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7916734	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91333400-91348400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr10:91333400-91351200	Weak transcription	Ovary	ovary
3	chr10:91334400-91351000	Weak transcription	NHLF	lung
4	chr10:91334400-91351200	Weak transcription	Fetal Stomach	stomach
5	chr10:91334400-91352800	Weak transcription	Fetal Lung	lung
6	chr10:91335200-91352200	Weak transcription	NHDF-Ad	bronchial
7	chr10:91335400-91370800	Weak transcription	A549	lung
8	chr10:91335400-91375600	Weak transcription	NH-A	brain
9	chr10:91335600-91348400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr10:91339000-91351600	Weak transcription	Aorta	Aorta
11	chr10:91340000-91351200	Weak transcription	Placenta	Placenta
12	chr10:91340200-91352400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr10:91340600-91352400	Weak transcription	Fetal Muscle Leg	muscle
14	chr10:91341000-91349000	Weak transcription	Psoas Muscle	Psoas
15	chr10:91342200-91348600	Strong transcription	Liver	Liver
16	chr10:91342200-91349200	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr10:91342200-91352000	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr10:91342400-91352200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr10:91342600-91349400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr10:91343000-91348600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr10:91343200-91348800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
22	chr10:91343200-91352600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr10:91343200-91372600	Weak transcription	Primary B cells from cord blood	blood
24	chr10:91343400-91349000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr10:91343400-91369200	Weak transcription	Brain Angular Gyrus	brain
26	chr10:91343600-91348400	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr10:91343600-91351200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr10:91344000-91351200	Weak transcription	Primary T cells from cord blood	blood
29	chr10:91344000-91369200	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr10:91344200-91351000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr10:91344400-91348400	Weak transcription	HUVEC	blood vessel
32	chr10:91344400-91351200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr10:91344400-91351400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr10:91344800-91348400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr10:91344800-91352000	Weak transcription	Fetal Muscle Trunk	muscle
36	chr10:91345000-91392800	Weak transcription	Hela-S3	cervix
37	chr10:91345200-91348800	Strong transcription	H1 Cell Line	embryonic stem cell
38	chr10:91345600-91350600	Weak transcription	Fetal Intestine Small	intestine
39	chr10:91345800-91351200	Weak transcription	Left Ventricle	heart
40	chr10:91346200-91348400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr10:91346400-91352200	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr10:91346400-91357800	Weak transcription	Fetal Kidney	kidney
43	chr10:91346400-91358000	Weak transcription	Fetal Brain Female	brain
44	chr10:91346600-91348400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr10:91346600-91352400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr10:91346600-91352400	Weak transcription	Brain Germinal Matrix	brain
47	chr10:91346600-91352600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr10:91347000-91348800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr10:91347000-91348800	Strong transcription	HepG2	liver
50	chr10:91347000-91349200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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