Variant report

Variant	rs7094983
Chromosome Location	chr10:91334365-91334366
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11185740	1.00[ASN][1000 genomes]
rs11185783	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185816	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12248961	1.00[ASN][1000 genomes]
rs17124950	0.89[YRI][hapmap];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6586199	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6586200	0.90[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6586208	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7070711	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071963	1.00[ASW][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7076750	1.00[ASN][1000 genomes]
rs7084776	1.00[ASN][1000 genomes]
rs7091814	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7099173	1.00[ASN][1000 genomes]
rs7893438	1.00[JPT][hapmap]
rs7897151	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7897230	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7900905	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7905978	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7907554	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7911174	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7913785	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7916734	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7917528	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91328200-91347200	Weak transcription	HSMM	muscle
2	chr10:91332800-91334800	Enhancers	HepG2	liver
3	chr10:91333200-91334400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr10:91333200-91339400	Weak transcription	Liver	Liver
5	chr10:91333200-91344600	Weak transcription	Left Ventricle	heart
6	chr10:91333400-91348400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr10:91333400-91351200	Weak transcription	Ovary	ovary
8	chr10:91334000-91334400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr10:91334000-91334400	Enhancers	Fetal Lung	lung
10	chr10:91334000-91334400	Enhancers	Fetal Stomach	stomach
11	chr10:91334000-91334600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr10:91334000-91335200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr10:91334000-91335200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr10:91334000-91335400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr10:91334000-91335600	Enhancers	Muscle Satellite Cultured Cells	--
16	chr10:91334200-91334400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr10:91334200-91334400	Enhancers	NHLF	lung
18	chr10:91334200-91335200	Enhancers	NHDF-Ad	bronchial
19	chr10:91334200-91335400	Enhancers	A549	lung
20	chr10:91334200-91335400	Enhancers	NH-A	brain
21	chr10:91334200-91335400	Enhancers	Osteobl	bone

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