Variant report

Variant	rs7917528
Chromosome Location	chr10:91294838-91294839
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11185746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11203091	1.00[CEU][hapmap]
rs12098678	0.95[ASN][1000 genomes]
rs17123591	0.95[ASN][1000 genomes]
rs17123683	0.95[ASN][1000 genomes]
rs7076750	1.00[CEU][hapmap]
rs73363816	0.95[ASN][1000 genomes]
rs73363825	0.95[ASN][1000 genomes]
rs73363852	0.95[ASN][1000 genomes]
rs73365517	0.95[ASN][1000 genomes]
rs7893438	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91293200-91296000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
2	chr10:91293600-91295000	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
3	chr10:91293600-91295000	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
4	chr10:91293800-91295400	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
5	chr10:91293800-91295800	Active TSS	H9 Cell Line	embryonic stem cell
6	chr10:91293800-91295800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
7	chr10:91293800-91296000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr10:91293800-91296200	Active TSS	Pancreas	Pancrea
9	chr10:91294000-91295000	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:91294000-91295000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
11	chr10:91294000-91295000	Bivalent Enhancer	HUVEC	blood vessel
12	chr10:91294000-91296000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
13	chr10:91294000-91296000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
14	chr10:91294000-91296000	Weak transcription	Fetal Heart	heart
15	chr10:91294000-91296000	Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr10:91294000-91296200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr10:91294200-91295200	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
18	chr10:91294200-91295200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr10:91294200-91295800	Active TSS	Left Ventricle	heart
20	chr10:91294200-91295800	Bivalent/Poised TSS	Psoas Muscle	Psoas
21	chr10:91294200-91295800	Active TSS	Right Ventricle	heart
22	chr10:91294400-91295000	Enhancers	Liver	Liver
23	chr10:91294400-91295200	Active TSS	Fetal Kidney	kidney
24	chr10:91294400-91295400	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
25	chr10:91294400-91295400	Flanking Bivalent TSS/Enh	Placenta	Placenta
26	chr10:91294400-91295800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
27	chr10:91294400-91295800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
28	chr10:91294400-91295800	Bivalent/Poised TSS	A549	lung
29	chr10:91294400-91295800	Bivalent/Poised TSS	NH-A	brain
30	chr10:91294600-91295000	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr10:91294600-91295000	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr10:91294600-91295000	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
33	chr10:91294600-91295000	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
34	chr10:91294600-91295200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
35	chr10:91294600-91295200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
36	chr10:91294600-91295200	Bivalent Enhancer	Brain Angular Gyrus	brain
37	chr10:91294600-91295200	Bivalent Enhancer	Fetal Brain Male	brain
38	chr10:91294600-91295600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
39	chr10:91294600-91295800	Bivalent Enhancer	Fetal Thymus	thymus
40	chr10:91294600-91296000	Bivalent/Poised TSS	Fetal Brain Female	brain
41	chr10:91294600-91296000	Active TSS	Right Atrium	heart
42	chr10:91294800-91295000	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr10:91294800-91295000	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr10:91294800-91295000	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr10:91294800-91295000	Bivalent Enhancer	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr10:91294800-91295000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr10:91294800-91295000	Bivalent Enhancer	Brain Anterior Caudate	brain
48	chr10:91294800-91295000	Bivalent Enhancer	Brain Substantia Nigra	brain
49	chr10:91294800-91295000	Bivalent Enhancer	Fetal Intestine Large	intestine
50	chr10:91294800-91295000	Active TSS	Ovary	ovary

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