Variant report

Variant	rs17123683
Chromosome Location	chr10:91314713-91314714
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10881641	1.00[CEU][hapmap]
rs11185746	0.95[ASN][1000 genomes]
rs11185823	1.00[CEU][hapmap]
rs11185840	1.00[CEU][hapmap]
rs11185848	1.00[CEU][hapmap]
rs11185849	1.00[CEU][hapmap]
rs12098678	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17123591	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73363816	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73363825	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73363852	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73365517	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7893438	1.00[JPT][hapmap]
rs7917528	1.00[JPT][hapmap];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91305000-91315600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:91312200-91314800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr10:91313400-91315000	Enhancers	A549	lung
4	chr10:91313600-91324600	Weak transcription	Aorta	Aorta
5	chr10:91314000-91315200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr10:91314200-91314800	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr10:91314200-91315600	Weak transcription	HSMM	muscle
8	chr10:91314200-91316000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr10:91314400-91314800	Weak transcription	Fetal Heart	heart
10	chr10:91314400-91316200	Weak transcription	Osteobl	bone
11	chr10:91314400-91316400	Weak transcription	NHLF	lung
12	chr10:91314400-91319800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr10:91314600-91316000	Weak transcription	Stomach Mucosa	stomach
14	chr10:91314600-91324600	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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