Variant report

Variant	rs11185823
Chromosome Location	chr10:91393162-91393163
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:91390559..91394357-chr10:91401032..91405711,7	MCF-7	breast:
2	chr10:91370491..91372733-chr10:91391688..91393603,3	MCF-7	breast:
3	chr10:91392070..91394267-chr10:91459711..91461300,2	MCF-7	breast:
4	chr10:91386291..91388321-chr10:91392443..91394687,2	MCF-7	breast:
5	chr10:91388415..91393520-chr10:91403562..91406264,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000232936	Chromatin interaction
ENSG00000152782	Chromatin interaction
ENSG00000249962	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10881624	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10881641	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11185822	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185824	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185827	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11185828	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11185840	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11185843	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11185844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11185848	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11185849	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1324701	1.00[AMR][1000 genomes]

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91351600-91403400	Weak transcription	Esophagus	oesophagus
2	chr10:91352600-91403400	Weak transcription	Small Intestine	intestine
3	chr10:91353800-91403800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:91359800-91403200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:91370200-91403200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr10:91371800-91393600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr10:91371800-91401600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr10:91371800-91403200	Weak transcription	HSMMtube	muscle
9	chr10:91372000-91393400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr10:91376000-91394200	Weak transcription	Primary T cells from cord blood	blood
11	chr10:91380600-91403200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr10:91383800-91393400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr10:91383800-91402600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr10:91384000-91394600	Weak transcription	Dnd41	blood
15	chr10:91384400-91393600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr10:91385000-91393600	Weak transcription	Left Ventricle	heart
17	chr10:91385000-91393800	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr10:91385000-91403000	Weak transcription	Fetal Muscle Trunk	muscle
19	chr10:91385400-91403000	Weak transcription	Primary hematopoietic stem cells	blood
20	chr10:91385600-91402800	Weak transcription	Fetal Muscle Leg	muscle
21	chr10:91385800-91395600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr10:91385800-91403200	Weak transcription	Fetal Brain Male	brain
23	chr10:91386000-91393600	Weak transcription	Right Ventricle	heart
24	chr10:91386000-91394000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr10:91386000-91402800	Weak transcription	NH-A	brain
26	chr10:91386000-91403000	Weak transcription	NHDF-Ad	bronchial
27	chr10:91386000-91403200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr10:91386000-91403200	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr10:91386000-91403200	Weak transcription	Ovary	ovary
30	chr10:91386600-91397000	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr10:91386800-91393200	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr10:91386800-91403200	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr10:91388200-91396800	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr10:91388200-91403400	Weak transcription	Thymus	Thymus
35	chr10:91389000-91393200	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr10:91389000-91393600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr10:91389000-91394000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr10:91389400-91394400	Enhancers	HepG2	liver
39	chr10:91389600-91402800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr10:91390600-91399200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr10:91391000-91398000	Weak transcription	K562	blood
42	chr10:91391200-91393400	Weak transcription	Fetal Brain Female	brain
43	chr10:91391200-91395600	Weak transcription	Fetal Stomach	stomach
44	chr10:91391400-91393600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr10:91391400-91401600	Weak transcription	Fetal Lung	lung
46	chr10:91391600-91393800	Enhancers	A549	lung
47	chr10:91391800-91395800	Enhancers	Skeletal Muscle Male	skeletal muscle
48	chr10:91391800-91399600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr10:91392000-91396000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
50	chr10:91392000-91396000	Enhancers	Skeletal Muscle Female	skeletal muscle

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