Variant report

Variant	rs10881624
Chromosome Location	chr10:91456750-91456751
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91455813..91457432-chr10:91459362..91460956,2	K562	blood:
2	chr10:91455393..91457712-chr10:91460648..91462191,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138182	Chromatin interaction
ENSG00000235100	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10159959	0.80[AFR][1000 genomes]
rs10881641	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10881680	0.84[ASN][1000 genomes]
rs11185822	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11185823	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11185824	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11185827	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185828	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185840	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185843	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185844	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185848	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185849	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12254780	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1324701	0.84[ASN][1000 genomes]
rs1998646	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2104370	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs58526788	0.82[ASN][1000 genomes]
rs729043	0.84[ASN][1000 genomes]
rs735934	0.84[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91444600-91460800	Weak transcription	Left Ventricle	heart
2	chr10:91445200-91460600	Weak transcription	Fetal Muscle Leg	muscle
3	chr10:91447200-91459800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr10:91453000-91460600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr10:91453400-91459400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:91453800-91460800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr10:91455000-91460400	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr10:91455400-91460600	Weak transcription	Psoas Muscle	Psoas
9	chr10:91456000-91457000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr10:91456000-91457000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr10:91456000-91459400	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr10:91456000-91459400	Weak transcription	NHEK	skin
13	chr10:91456000-91459600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr10:91456000-91459800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr10:91456000-91459800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr10:91456000-91460800	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr10:91456200-91459200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr10:91456200-91460200	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr10:91456200-91460200	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr10:91456200-91460200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr10:91456200-91460400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr10:91456200-91460800	Weak transcription	Ovary	ovary
23	chr10:91456400-91456800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr10:91456600-91459400	Enhancers	HepG2	liver

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