Variant report

Variant	rs11185828
Chromosome Location	chr10:91408538-91408539
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000235100	Chromatin interaction
ENSG00000138182	Chromatin interaction
ENSG00000249962	Chromatin interaction
ENSG00000152782	Chromatin interaction
ENSG00000232936	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10881624	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10881641	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10881680	0.84[ASN][1000 genomes]
rs11185822	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11185823	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11185824	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11185827	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185840	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185843	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185844	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185848	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185849	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12254780	0.84[ASN][1000 genomes]
rs1324701	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1998646	0.84[ASN][1000 genomes]
rs2104370	0.84[ASN][1000 genomes]
rs58526788	0.82[ASN][1000 genomes]
rs729043	0.84[ASN][1000 genomes]
rs735934	0.84[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91405800-91409800	Weak transcription	Pancreas	Pancrea
2	chr10:91405800-91411000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr10:91406000-91409000	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr10:91406000-91409200	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr10:91406000-91411400	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr10:91406400-91411000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr10:91406400-91414200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:91406600-91413800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr10:91406600-91415800	Weak transcription	Colonic Mucosa	Colon
10	chr10:91406800-91411000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr10:91406800-91411200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr10:91406800-91411200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr10:91406800-91411400	Weak transcription	Primary B cells from cord blood	blood
14	chr10:91407000-91411200	Weak transcription	Primary B cells from peripheral blood	blood
15	chr10:91407200-91409600	Weak transcription	K562	blood
16	chr10:91407200-91411400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr10:91407200-91418400	Weak transcription	Psoas Muscle	Psoas
18	chr10:91408000-91409400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links