Variant report

Variant	rs11185746
Chromosome Location	chr10:91296970-91296971
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12098678	0.95[ASN][1000 genomes]
rs17123591	0.95[ASN][1000 genomes]
rs17123683	0.95[ASN][1000 genomes]
rs73363816	0.95[ASN][1000 genomes]
rs73363825	0.95[ASN][1000 genomes]
rs73363852	0.95[ASN][1000 genomes]
rs73365517	0.95[ASN][1000 genomes]
rs7917528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv932413	chr10:91294861-91300246	Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91295200-91297000	Weak transcription	Fetal Kidney	kidney
2	chr10:91295800-91297400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:91295800-91300200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr10:91295800-91300200	Weak transcription	HSMM	muscle
5	chr10:91296000-91298600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr10:91296000-91304800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:91296200-91300200	Weak transcription	Fetal Heart	heart
8	chr10:91296400-91297800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:91296400-91307400	Weak transcription	Pancreas	Pancrea
10	chr10:91296600-91297800	Enhancers	H1 Cell Line	embryonic stem cell
11	chr10:91296600-91298000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:91296800-91297000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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