Variant report

Variant	rs73363825
Chromosome Location	chr10:91296117-91296118
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GTF2F1	chr10:91295998-91296130	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
SLC16A12	TF binding region

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11185746	0.95[ASN][1000 genomes]
rs12098678	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17123591	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17123683	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73363816	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73363852	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73365517	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7917528	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv932413	chr10:91294861-91300246	Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91293800-91296200	Active TSS	Pancreas	Pancrea
2	chr10:91294000-91296200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr10:91294800-91296200	Active TSS	HSMMtube	muscle
4	chr10:91295200-91296400	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
5	chr10:91295200-91297000	Weak transcription	Fetal Kidney	kidney
6	chr10:91295600-91296200	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:91295600-91296200	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
8	chr10:91295800-91296200	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
9	chr10:91295800-91296200	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
10	chr10:91295800-91296200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
11	chr10:91295800-91296200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
12	chr10:91295800-91297400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:91295800-91300200	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr10:91295800-91300200	Weak transcription	HSMM	muscle
15	chr10:91296000-91296200	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
16	chr10:91296000-91296200	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr10:91296000-91296200	Bivalent/Poised TSS	Adipose Nuclei	Adipose
18	chr10:91296000-91296200	Bivalent Enhancer	Brain Cingulate Gyrus	brain
19	chr10:91296000-91296200	Enhancers	Fetal Heart	heart
20	chr10:91296000-91296200	Flanking Active TSS	Placenta	Placenta
21	chr10:91296000-91296200	Bivalent Enhancer	Fetal Stomach	stomach
22	chr10:91296000-91296200	Bivalent Enhancer	Spleen	Spleen
23	chr10:91296000-91296200	Bivalent Enhancer	HepG2	liver
24	chr10:91296000-91296400	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr10:91296000-91296400	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
26	chr10:91296000-91296400	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
27	chr10:91296000-91296400	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
28	chr10:91296000-91296400	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
29	chr10:91296000-91296400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr10:91296000-91296400	Enhancers	Left Ventricle	heart
31	chr10:91296000-91296600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr10:91296000-91298600	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr10:91296000-91304800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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