Variant report

Variant	rs7905978
Chromosome Location	chr10:91350921-91350922
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91349261..91351592-chr10:91402554..91405180,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000249962	Chromatin interaction
ENSG00000232936	Chromatin interaction
ENSG00000152782	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11185740	1.00[ASN][1000 genomes]
rs11185783	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185816	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12248961	1.00[ASN][1000 genomes]
rs17124950	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6586199	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6586200	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6586208	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7070711	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071963	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7076750	1.00[ASN][1000 genomes]
rs7079873	0.82[YRI][hapmap]
rs7084776	1.00[ASN][1000 genomes]
rs7091814	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7094983	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7095066	0.82[YRI][hapmap]
rs7099173	1.00[ASN][1000 genomes]
rs7897151	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7897230	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7900905	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7907554	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7911174	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7913785	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7916734	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91333400-91351200	Weak transcription	Ovary	ovary
2	chr10:91334400-91351000	Weak transcription	NHLF	lung
3	chr10:91334400-91351200	Weak transcription	Fetal Stomach	stomach
4	chr10:91334400-91352800	Weak transcription	Fetal Lung	lung
5	chr10:91335200-91352200	Weak transcription	NHDF-Ad	bronchial
6	chr10:91335400-91370800	Weak transcription	A549	lung
7	chr10:91335400-91375600	Weak transcription	NH-A	brain
8	chr10:91339000-91351600	Weak transcription	Aorta	Aorta
9	chr10:91340000-91351200	Weak transcription	Placenta	Placenta
10	chr10:91340200-91352400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr10:91340600-91352400	Weak transcription	Fetal Muscle Leg	muscle
12	chr10:91342200-91352000	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr10:91342400-91352200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr10:91343200-91352600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr10:91343200-91372600	Weak transcription	Primary B cells from cord blood	blood
16	chr10:91343400-91369200	Weak transcription	Brain Angular Gyrus	brain
17	chr10:91343600-91351200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr10:91344000-91351200	Weak transcription	Primary T cells from cord blood	blood
19	chr10:91344000-91369200	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr10:91344200-91351000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr10:91344400-91351200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr10:91344400-91351400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr10:91344800-91352000	Weak transcription	Fetal Muscle Trunk	muscle
24	chr10:91345000-91392800	Weak transcription	Hela-S3	cervix
25	chr10:91345800-91351200	Weak transcription	Left Ventricle	heart
26	chr10:91346400-91352200	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr10:91346400-91357800	Weak transcription	Fetal Kidney	kidney
28	chr10:91346400-91358000	Weak transcription	Fetal Brain Female	brain
29	chr10:91346600-91352400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr10:91346600-91352400	Weak transcription	Brain Germinal Matrix	brain
31	chr10:91346600-91352600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr10:91347000-91351200	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr10:91347000-91359200	Weak transcription	Brain Cingulate Gyrus	brain
34	chr10:91347800-91352400	Weak transcription	HMEC	breast
35	chr10:91348200-91351000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr10:91348400-91351000	Weak transcription	Osteobl	bone
37	chr10:91348400-91351200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr10:91348400-91352200	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr10:91348600-91373200	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr10:91348800-91351200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr10:91348800-91351400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr10:91348800-91351400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr10:91348800-91351600	Weak transcription	Right Ventricle	heart
44	chr10:91348800-91351600	Weak transcription	HepG2	liver
45	chr10:91348800-91351800	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr10:91348800-91351800	Weak transcription	Primary hematopoietic stem cells	blood
47	chr10:91348800-91352400	Weak transcription	Duodenum Mucosa	Duodenum
48	chr10:91348800-91358000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr10:91349200-91352400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr10:91349200-91353400	Enhancers	Fetal Heart	heart

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