Variant report

Variant	rs7095066
Chromosome Location	chr10:91349758-91349759
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91349261..91351592-chr10:91402554..91405180,3	MCF-7	breast:
2	chr10:91347329..91350012-chr10:91354291..91355825,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000232936	Chromatin interaction
ENSG00000152782	Chromatin interaction
ENSG00000249962	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1327154	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17480775	0.98[ASN][1000 genomes]
rs60742632	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7076776	0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7079873	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7088820	0.98[ASN][1000 genomes]
rs74146980	0.98[ASN][1000 genomes]
rs74146984	0.98[ASN][1000 genomes]
rs74146985	0.98[ASN][1000 genomes]
rs7477497	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7897230	0.86[MKK][hapmap];0.83[YRI][hapmap]
rs7905978	0.82[YRI][hapmap]
rs7924150	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7095066	GRAP2	trans	lymphoblastoid	seeQTL
rs7095066	IFIT1	cis	lymphoblastoid	seeQTL

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91333400-91351200	Weak transcription	Ovary	ovary
2	chr10:91334400-91351000	Weak transcription	NHLF	lung
3	chr10:91334400-91351200	Weak transcription	Fetal Stomach	stomach
4	chr10:91334400-91352800	Weak transcription	Fetal Lung	lung
5	chr10:91335200-91352200	Weak transcription	NHDF-Ad	bronchial
6	chr10:91335400-91370800	Weak transcription	A549	lung
7	chr10:91335400-91375600	Weak transcription	NH-A	brain
8	chr10:91339000-91351600	Weak transcription	Aorta	Aorta
9	chr10:91340000-91351200	Weak transcription	Placenta	Placenta
10	chr10:91340200-91352400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr10:91340600-91352400	Weak transcription	Fetal Muscle Leg	muscle
12	chr10:91342200-91352000	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr10:91342400-91352200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr10:91343200-91352600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr10:91343200-91372600	Weak transcription	Primary B cells from cord blood	blood
16	chr10:91343400-91369200	Weak transcription	Brain Angular Gyrus	brain
17	chr10:91343600-91351200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr10:91344000-91351200	Weak transcription	Primary T cells from cord blood	blood
19	chr10:91344000-91369200	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr10:91344200-91351000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr10:91344400-91351200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr10:91344400-91351400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr10:91344800-91352000	Weak transcription	Fetal Muscle Trunk	muscle
24	chr10:91345000-91392800	Weak transcription	Hela-S3	cervix
25	chr10:91345600-91350600	Weak transcription	Fetal Intestine Small	intestine
26	chr10:91345800-91351200	Weak transcription	Left Ventricle	heart
27	chr10:91346400-91352200	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr10:91346400-91357800	Weak transcription	Fetal Kidney	kidney
29	chr10:91346400-91358000	Weak transcription	Fetal Brain Female	brain
30	chr10:91346600-91352400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr10:91346600-91352400	Weak transcription	Brain Germinal Matrix	brain
32	chr10:91346600-91352600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr10:91347000-91351200	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr10:91347000-91359200	Weak transcription	Brain Cingulate Gyrus	brain
35	chr10:91347800-91352400	Weak transcription	HMEC	breast
36	chr10:91348200-91351000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr10:91348400-91350000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr10:91348400-91351000	Weak transcription	Osteobl	bone
39	chr10:91348400-91351200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr10:91348400-91352200	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr10:91348600-91373200	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr10:91348800-91350200	Weak transcription	Fetal Intestine Large	intestine
43	chr10:91348800-91350400	Weak transcription	Liver	Liver
44	chr10:91348800-91350600	Weak transcription	HUVEC	blood vessel
45	chr10:91348800-91351200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr10:91348800-91351400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr10:91348800-91351400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr10:91348800-91351600	Weak transcription	Right Ventricle	heart
49	chr10:91348800-91351600	Weak transcription	HepG2	liver
50	chr10:91348800-91351800	Weak transcription	H1 Cell Line	embryonic stem cell

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