Variant report

Variant	rs7079873
Chromosome Location	chr10:91346003-91346004
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91345240..91347210-chr10:91402338..91403958,2	K562	blood:

Variant related genes	Relation type
ENSG00000152782	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1327154	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17480775	0.98[ASN][1000 genomes]
rs60742632	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7076776	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7088820	0.98[ASN][1000 genomes]
rs7095066	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74146980	0.98[ASN][1000 genomes]
rs74146984	0.98[ASN][1000 genomes]
rs74146985	0.98[ASN][1000 genomes]
rs7477497	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7897230	0.86[MKK][hapmap];0.83[YRI][hapmap]
rs7905978	0.82[YRI][hapmap]
rs7924150	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7079873	GRAP2	trans	lymphoblastoid	seeQTL
rs7079873	IFIT1	cis	lymphoblastoid	seeQTL

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91328200-91347200	Weak transcription	HSMM	muscle
2	chr10:91333400-91348400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr10:91333400-91351200	Weak transcription	Ovary	ovary
4	chr10:91334400-91351000	Weak transcription	NHLF	lung
5	chr10:91334400-91351200	Weak transcription	Fetal Stomach	stomach
6	chr10:91334400-91352800	Weak transcription	Fetal Lung	lung
7	chr10:91335200-91347800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr10:91335200-91352200	Weak transcription	NHDF-Ad	bronchial
9	chr10:91335400-91347000	Weak transcription	HepG2	liver
10	chr10:91335400-91347600	Weak transcription	Osteobl	bone
11	chr10:91335400-91370800	Weak transcription	A549	lung
12	chr10:91335400-91375600	Weak transcription	NH-A	brain
13	chr10:91335600-91348400	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr10:91336600-91347800	Weak transcription	Primary hematopoietic stem cells	blood
15	chr10:91337400-91348000	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr10:91338000-91347800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr10:91339000-91351600	Weak transcription	Aorta	Aorta
18	chr10:91339400-91347000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr10:91340000-91351200	Weak transcription	Placenta	Placenta
20	chr10:91340200-91352400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr10:91340600-91352400	Weak transcription	Fetal Muscle Leg	muscle
22	chr10:91340800-91347800	Weak transcription	Fetal Intestine Large	intestine
23	chr10:91341000-91349000	Weak transcription	Psoas Muscle	Psoas
24	chr10:91341600-91348200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr10:91342200-91347000	Weak transcription	Dnd41	blood
26	chr10:91342200-91348600	Strong transcription	Liver	Liver
27	chr10:91342200-91349200	Strong transcription	HUES64 Cell Line	embryonic stem cell
28	chr10:91342200-91352000	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr10:91342400-91352200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr10:91342600-91347000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr10:91342600-91347200	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr10:91342600-91349400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
33	chr10:91342800-91347600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr10:91343000-91347800	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr10:91343000-91348600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr10:91343200-91346400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr10:91343200-91348800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
38	chr10:91343200-91352600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr10:91343200-91372600	Weak transcription	Primary B cells from cord blood	blood
40	chr10:91343400-91348200	Weak transcription	HSMMtube	muscle
41	chr10:91343400-91349000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr10:91343400-91369200	Weak transcription	Brain Angular Gyrus	brain
43	chr10:91343600-91347600	Weak transcription	Duodenum Mucosa	Duodenum
44	chr10:91343600-91348400	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr10:91343600-91351200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr10:91344000-91351200	Weak transcription	Primary T cells from cord blood	blood
47	chr10:91344000-91369200	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr10:91344200-91347000	Weak transcription	HMEC	breast
49	chr10:91344200-91351000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr10:91344400-91348400	Weak transcription	HUVEC	blood vessel

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