Variant report

Variant	rs7897151
Chromosome Location	chr10:91341688-91341689
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91340078..91341868-chr10:91467795..91469840,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11185783	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11185816	0.93[AMR][1000 genomes]
rs17124950	1.00[CEU][hapmap];0.80[YRI][hapmap];0.93[AMR][1000 genomes]
rs6586199	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6586200	0.82[YRI][hapmap];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6586208	0.87[AMR][1000 genomes]
rs7070711	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7071963	0.90[ASW][hapmap];1.00[CEU][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.90[TSI][hapmap];0.91[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7091814	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7094983	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7897230	1.00[CEU][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7900905	0.93[AMR][1000 genomes]
rs7905978	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7907554	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7911174	1.00[CEU][hapmap];0.91[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7913785	1.00[CEU][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7916734	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91328200-91347200	Weak transcription	HSMM	muscle
2	chr10:91333200-91344600	Weak transcription	Left Ventricle	heart
3	chr10:91333400-91348400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr10:91333400-91351200	Weak transcription	Ovary	ovary
5	chr10:91334400-91351000	Weak transcription	NHLF	lung
6	chr10:91334400-91351200	Weak transcription	Fetal Stomach	stomach
7	chr10:91334400-91352800	Weak transcription	Fetal Lung	lung
8	chr10:91335200-91347800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:91335200-91352200	Weak transcription	NHDF-Ad	bronchial
10	chr10:91335400-91343200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr10:91335400-91347000	Weak transcription	HepG2	liver
12	chr10:91335400-91347600	Weak transcription	Osteobl	bone
13	chr10:91335400-91370800	Weak transcription	A549	lung
14	chr10:91335400-91375600	Weak transcription	NH-A	brain
15	chr10:91335600-91348400	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr10:91336600-91347800	Weak transcription	Primary hematopoietic stem cells	blood
17	chr10:91337200-91345000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr10:91337400-91348000	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr10:91338000-91347800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr10:91338600-91344800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr10:91339000-91351600	Weak transcription	Aorta	Aorta
22	chr10:91339200-91342000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr10:91339400-91347000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr10:91339800-91342000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr10:91340000-91351200	Weak transcription	Placenta	Placenta
26	chr10:91340200-91352400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr10:91340400-91342200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr10:91340400-91342200	Weak transcription	Liver	Liver
29	chr10:91340600-91342200	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr10:91340600-91344800	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr10:91340600-91352400	Weak transcription	Fetal Muscle Leg	muscle
32	chr10:91340800-91347800	Weak transcription	Fetal Intestine Large	intestine
33	chr10:91341000-91345200	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr10:91341000-91349000	Weak transcription	Psoas Muscle	Psoas
35	chr10:91341200-91345200	Weak transcription	Fetal Heart	heart
36	chr10:91341600-91342400	Enhancers	iPS-15b Cell Line	embryonic stem cell
37	chr10:91341600-91343400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr10:91341600-91348200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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