Variant report

Variant	rs17124950
Chromosome Location	chr10:91385556-91385557
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLC16A12-1	chr10:91385452-91385610	NONHSAT015519

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11185740	1.00[ASN][1000 genomes]
rs11185783	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185816	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12248961	1.00[ASN][1000 genomes]
rs6586199	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6586200	1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6586208	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7070711	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7071963	1.00[CEU][hapmap];0.89[YRI][hapmap];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7076750	1.00[ASN][1000 genomes]
rs7084776	1.00[ASN][1000 genomes]
rs7091814	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7094983	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7099173	1.00[ASN][1000 genomes]
rs7897151	0.93[AMR][1000 genomes]
rs7897230	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7900905	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7905978	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7907554	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7911174	1.00[CEU][hapmap];0.90[YRI][hapmap];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7913785	1.00[CEU][hapmap];0.90[YRI][hapmap];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7916734	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91345000-91392800	Weak transcription	Hela-S3	cervix
2	chr10:91351600-91403400	Weak transcription	Esophagus	oesophagus
3	chr10:91352600-91403400	Weak transcription	Small Intestine	intestine
4	chr10:91353800-91403800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:91359400-91393000	Weak transcription	NHEK	skin
6	chr10:91359800-91403200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:91370200-91385800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr10:91370200-91403200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr10:91371000-91392800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:91371400-91389400	Weak transcription	A549	lung
11	chr10:91371800-91389400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr10:91371800-91393600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr10:91371800-91401600	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr10:91371800-91403200	Weak transcription	HSMMtube	muscle
15	chr10:91372000-91393400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr10:91376000-91394200	Weak transcription	Primary T cells from cord blood	blood
17	chr10:91380600-91403200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr10:91381400-91385600	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr10:91381600-91390600	Weak transcription	Fetal Stomach	stomach
20	chr10:91381800-91392000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr10:91382000-91386600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:91383200-91389800	Enhancers	Fetal Heart	heart
23	chr10:91383800-91385800	Weak transcription	Right Atrium	heart
24	chr10:91383800-91392800	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr10:91383800-91392800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr10:91383800-91393400	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr10:91383800-91402600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr10:91384000-91385600	Weak transcription	GM12878-XiMat	blood
29	chr10:91384000-91386400	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr10:91384000-91394600	Weak transcription	Dnd41	blood
31	chr10:91384400-91385600	Enhancers	Fetal Muscle Leg	muscle
32	chr10:91384400-91393600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr10:91384600-91386000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr10:91384600-91386000	Enhancers	Fetal Kidney	kidney
35	chr10:91384600-91386000	Enhancers	Ovary	ovary
36	chr10:91384600-91386000	Enhancers	NH-A	brain
37	chr10:91384600-91386000	Enhancers	Osteobl	bone
38	chr10:91384800-91386000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr10:91384800-91386200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr10:91384800-91392600	Weak transcription	Psoas Muscle	Psoas
41	chr10:91385000-91385600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr10:91385000-91385800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr10:91385000-91385800	Enhancers	Skeletal Muscle Female	skeletal muscle
44	chr10:91385000-91385800	Enhancers	HMEC	breast
45	chr10:91385000-91386000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr10:91385000-91387800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr10:91385000-91393600	Weak transcription	Left Ventricle	heart
48	chr10:91385000-91393800	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr10:91385000-91403000	Weak transcription	Fetal Muscle Trunk	muscle
50	chr10:91385200-91386000	Enhancers	Right Ventricle	heart

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