Variant report

Variant	rs12248961
Chromosome Location	chr10:91290423-91290424
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11185740	1.00[ASN][1000 genomes]
rs11185783	1.00[ASN][1000 genomes]
rs11185816	1.00[ASN][1000 genomes]
rs17124950	1.00[ASN][1000 genomes]
rs6586199	1.00[ASN][1000 genomes]
rs6586200	1.00[ASN][1000 genomes]
rs6586208	1.00[ASN][1000 genomes]
rs7070711	1.00[ASN][1000 genomes]
rs7071963	1.00[ASN][1000 genomes]
rs7076750	1.00[ASN][1000 genomes]
rs7084776	1.00[ASN][1000 genomes]
rs7091814	1.00[ASN][1000 genomes]
rs7094983	1.00[ASN][1000 genomes]
rs7099173	1.00[ASN][1000 genomes]
rs7897230	1.00[ASN][1000 genomes]
rs7900905	1.00[ASN][1000 genomes]
rs7905978	1.00[ASN][1000 genomes]
rs7907554	1.00[ASN][1000 genomes]
rs7911174	1.00[ASN][1000 genomes]
rs7913785	1.00[ASN][1000 genomes]
rs7916734	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91279400-91294800	Weak transcription	HSMM	muscle
2	chr10:91279600-91292000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr10:91283600-91294600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr10:91285200-91291400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr10:91286200-91291400	Weak transcription	Fetal Heart	heart
6	chr10:91288000-91291200	Weak transcription	Pancreas	Pancrea
7	chr10:91289600-91292400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr10:91289800-91290600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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