Variant report

Variant	rs6586199
Chromosome Location	chr10:91336191-91336192
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11185740	1.00[ASN][1000 genomes]
rs11185783	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185816	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12248961	1.00[ASN][1000 genomes]
rs17124950	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6586200	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6586208	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7070711	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071963	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7076750	1.00[ASN][1000 genomes]
rs7084776	1.00[ASN][1000 genomes]
rs7091814	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7094983	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7099173	1.00[ASN][1000 genomes]
rs7897151	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7897230	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7900905	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7905978	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7907554	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7911174	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7913785	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7916734	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91328200-91347200	Weak transcription	HSMM	muscle
2	chr10:91333200-91339400	Weak transcription	Liver	Liver
3	chr10:91333200-91344600	Weak transcription	Left Ventricle	heart
4	chr10:91333400-91348400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr10:91333400-91351200	Weak transcription	Ovary	ovary
6	chr10:91334400-91336600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr10:91334400-91351000	Weak transcription	NHLF	lung
8	chr10:91334400-91351200	Weak transcription	Fetal Stomach	stomach
9	chr10:91334400-91352800	Weak transcription	Fetal Lung	lung
10	chr10:91335200-91347800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr10:91335200-91352200	Weak transcription	NHDF-Ad	bronchial
12	chr10:91335400-91343200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr10:91335400-91347000	Weak transcription	HepG2	liver
14	chr10:91335400-91347600	Weak transcription	Osteobl	bone
15	chr10:91335400-91370800	Weak transcription	A549	lung
16	chr10:91335400-91375600	Weak transcription	NH-A	brain
17	chr10:91335600-91348400	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr10:91336000-91336600	Active TSS	Fetal Heart	heart
19	chr10:91336000-91338000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links