Variant report

Variant	rs12267092
Chromosome Location	chr10:23056770-23056771
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11013121	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11013122	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12255596	0.83[AMR][1000 genomes]
rs16916138	1.00[MEX][hapmap]
rs16916144	1.00[MEX][hapmap]
rs16922677	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16922679	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16922702	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv550210	chr10:23012096-23064702	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv550211	chr10:23020350-23079385	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv550212	chr10:23030282-23086690	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv894960	chr10:23049139-23113841	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv894961	chr10:23049139-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv466833	chr10:23050683-23110797	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv894962	chr10:23050683-23113841	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv894963	chr10:23050683-23121820	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv894964	chr10:23050683-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23052000-23057600	Enhancers	Brain Substantia Nigra	brain
2	chr10:23053000-23057000	Enhancers	Primary B cells from peripheral blood	blood
3	chr10:23053400-23057400	Enhancers	Colon Smooth Muscle	Colon
4	chr10:23054000-23057600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr10:23055200-23057600	Enhancers	Stomach Smooth Muscle	stomach
6	chr10:23055200-23057800	Enhancers	Duodenum Smooth Muscle	Duodenum
7	chr10:23055400-23057000	Enhancers	Liver	Liver
8	chr10:23055800-23057600	Enhancers	Adipose Nuclei	Adipose
9	chr10:23055800-23057600	Enhancers	Brain Anterior Caudate	brain
10	chr10:23055800-23057600	Enhancers	Brain Hippocampus Middle	brain
11	chr10:23055800-23057600	Enhancers	Rectal Smooth Muscle	rectum
12	chr10:23055800-23057800	Enhancers	Fetal Stomach	stomach
13	chr10:23056000-23058200	Enhancers	GM12878-XiMat	blood
14	chr10:23056200-23057200	Weak transcription	Left Ventricle	heart
15	chr10:23056200-23057200	Weak transcription	Stomach Mucosa	stomach
16	chr10:23056600-23056800	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr10:23056600-23057800	Enhancers	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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