Variant report

Variant	rs16916144
Chromosome Location	chr10:23217478-23217479
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr10:23216574-23217554	SK-N-SH	brain:	n/a	chr10:23217107-23217116
2	CTCF	chr10:23217340-23217490	SK-N-SH_RA	brain:	n/a	n/a
3	E2F6	chr10:23216576-23217507	A549	lung:	n/a	chr10:23216880-23216894 chr10:23216924-23216933 chr10:23216926-23216936

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23216878..23219507-chr10:23220223..23223862,3	K562	blood:
2	chr10:23216878..23218671-chr10:23220223..23223029,3	K562	blood:

Variant related genes	Relation type
ARMC3	TF binding region
ENSG00000165309	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1574237	1.00[AMR][1000 genomes]
rs16916138	1.00[ASW][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes]
rs16922799	0.88[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16916144	MOAP1	trans	lymphoblastoid	seeQTL

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23216200-23218800	Active TSS	Brain Anterior Caudate	brain
2	chr10:23216400-23217600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:23216400-23217600	Active TSS	Fetal Kidney	kidney
4	chr10:23216400-23218000	Active TSS	Fetal Lung	lung
5	chr10:23216800-23217600	Active TSS	A549	lung
6	chr10:23217200-23217600	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr10:23217200-23217600	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr10:23217200-23220400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr10:23217200-23221000	Weak transcription	HSMM	muscle
10	chr10:23217400-23217600	Enhancers	Brain Hippocampus Middle	brain
11	chr10:23217400-23220400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr10:23217400-23220400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr10:23217400-23220400	Weak transcription	Brain Angular Gyrus	brain
14	chr10:23217400-23220400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr10:23217400-23220400	Weak transcription	Duodenum Mucosa	Duodenum
16	chr10:23217400-23220600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr10:23217400-23220600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr10:23217400-23220600	Weak transcription	Fetal Heart	heart
19	chr10:23217400-23220600	Weak transcription	NH-A	brain
20	chr10:23217400-23220800	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr10:23217400-23220800	Weak transcription	GM12878-XiMat	blood
22	chr10:23217400-23221000	Weak transcription	Brain Substantia Nigra	brain

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