Variant report

Variant	rs12267338
Chromosome Location	chr10:61890398-61890399
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:61889007..61891472-chr10:61894256..61896110,2	K562	blood:
2	chr10:61831857..61834609-chr10:61888735..61891258,2	K562	blood:
3	chr10:61665160..61668341-chr10:61888603..61892696,3	K562	blood:
4	chr10:61861551..61863282-chr10:61890286..61892542,2	K562	blood:
5	chr10:61888385..61891711-chr10:61898736..61901615,3	K562	blood:
6	chr10:61890183..61891726-chr10:61896957..61899283,2	MCF-7	breast:
7	chr10:61889605..61891728-chr10:61893277..61895893,3	K562	blood:
8	chr10:61890057..61892985-chr10:61893731..61896360,2	MCF-7	breast:
9	chr10:61664881..61668022-chr10:61889742..61892739,3	K562	blood:
10	chr10:61890014..61894591-chr10:61896365..61903808,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000151150	Chromatin interaction
ENSG00000108091	Chromatin interaction

rs_ID	r²[population]
rs10994202	1.00[AMR][1000 genomes]
rs10994203	1.00[AMR][1000 genomes]
rs12242996	1.00[AMR][1000 genomes]
rs12248766	1.00[AMR][1000 genomes]
rs12250925	1.00[AMR][1000 genomes]
rs55715866	1.00[AMR][1000 genomes]
rs59854421	1.00[AMR][1000 genomes]
rs74156410	1.00[AMR][1000 genomes]

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61836000-61893200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr10:61841200-61899400	Weak transcription	Right Ventricle	heart
3	chr10:61848000-61900400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr10:61859800-61900200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr10:61860000-61900000	Weak transcription	Fetal Brain Male	brain
6	chr10:61867000-61910200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr10:61867600-61891200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:61868800-61891400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr10:61868800-61893000	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr10:61869000-61913200	Weak transcription	Primary T cells from cord blood	blood
11	chr10:61869200-61895800	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr10:61875000-61898800	Weak transcription	Rectal Smooth Muscle	rectum
13	chr10:61875200-61899400	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr10:61875200-61910800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr10:61879600-61930200	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr10:61880000-61893000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:61882200-61900600	Weak transcription	Gastric	stomach
18	chr10:61883600-61891400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr10:61883600-61915000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr10:61883800-61894200	Weak transcription	Fetal Heart	heart
21	chr10:61883800-61899200	Weak transcription	NH-A	brain
22	chr10:61883800-61899400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr10:61883800-61900000	Weak transcription	Brain Angular Gyrus	brain
24	chr10:61883800-61900800	Weak transcription	Brain Anterior Caudate	brain
25	chr10:61884000-61898400	Weak transcription	Fetal Muscle Trunk	muscle
26	chr10:61884000-61899800	Weak transcription	HSMMtube	muscle
27	chr10:61884600-61891400	Weak transcription	Left Ventricle	heart
28	chr10:61884600-61895000	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr10:61887400-61893000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr10:61888400-61895200	Weak transcription	Placenta	Placenta
31	chr10:61888600-61890400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr10:61889400-61890600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr10:61889400-61891400	Enhancers	Fetal Intestine Small	intestine
34	chr10:61889400-61924200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr10:61889600-61890400	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr10:61889600-61890600	Enhancers	ES-I3 Cell Line	embryonic stem cell
37	chr10:61889600-61890600	Enhancers	HUES64 Cell Line	embryonic stem cell
38	chr10:61889600-61890600	Enhancers	iPS-15b Cell Line	embryonic stem cell
39	chr10:61889600-61890800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr10:61889600-61890800	Enhancers	Fetal Intestine Large	intestine
41	chr10:61889800-61890400	Enhancers	HUES48 Cell Line	embryonic stem cell
42	chr10:61889800-61890400	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr10:61889800-61890400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr10:61889800-61890400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr10:61889800-61890400	Enhancers	Primary hematopoietic stem cells short term culture	blood
46	chr10:61889800-61890400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr10:61889800-61890400	Enhancers	Stomach Mucosa	stomach
48	chr10:61889800-61890400	Enhancers	Hela-S3	cervix
49	chr10:61889800-61890400	Enhancers	HMEC	breast
50	chr10:61889800-61890400	Flanking Active TSS	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links